Lab Members Research Focus Publications Home
Publications:
Haugen, P., Bhattacharya, D., Palmer, J. D., Turner, S., Lewis, L. A., and Pryer, K. M. Group I introns and homing endonuclease genes in prokaryotes. Submitted.
Richardson A. O., and Palmer, J. D. 2006. Horizontal gene transfer in plants. J. Exp. Botany, in press
Chumley, T. W., Palmer, J. D., Mower, J. P., Fourcade, H. M., Calie, P. J., Boore, J. L., and Jansen, R. K. 2006. The complete chloroplast genome sequence of Pelargonium ´ hortorum: Organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. Mol. Biol. Evol., 23:2175-2190
Rice, D. W. and Palmer, J. D. 2006. An exceptional horizontal gene transfer in plastids: Gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biology 4:31 (15 pages). (PDF)
Mower, J. P. and Palmer, J. D. 2006. Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris. Mol. Gen. Genomics 276:285-296. (PDF)
Ong, H. C. and Palmer, J. D. 2006. Pervasive survival of expressed mitochondrial rps14 pseudogenes in grasses and their relatives for 80 million years following three functional transfers to the nucleus. BMC Evol. Biol. 6:55 (16 pages). (PDF)
Parkinson, C. L., Mower, J. P., Qiu, Y.-L., Shirk, A., Song, K., Young, N. D., dePamphilis, C. W., and Palmer, J. D. 2005. Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae. BMC Evol. Biol. 5:73 (12 pages). (PDF)
Fischer, W. M. and Palmer, J. D. 2005. Evidence from small-subunit ribosomal RNA sequences for a fungal origin of Microsporidia. Mol. Phylogenet. Evol. 36:606-622
Bergthorsson, U., Richardson, A., Young, G. J., Goertzen, L., and Palmer, J. D. 2004. Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella. Proc. Natl. Acad. Sci. USA 101:17747-17752. (PDF)
Cho, Y., Mower, J. P., Qiu, Y.-L., and Palmer, J. D. 2004. Mitochondrial substitution rates are extraordinarily elevated and variable within a genus of flowering plants. Proc. Natl. Acad. Sci. USA 101:17741-17746. (PDF)
Keeling, P. J., Archibald, J. M., Fast, N. M., and Palmer, J. D. 2004. Comment on “The evolution of modern eukaryotic phytoplankton”. Science 306:2191-2192. (PDF)
Mower, J. P., Stefanovic, S., Young, G. J., and Palmer, J. D. 2004. Gene transfer from parasitic to host plants. Nature 432:165-166. (PDF)
Stefanovic, S., Rice, D. W., and Palmer, J. D. 2004. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? BMC Evol. Biol. 4:35 (19 pages). (PDF)
Soltis, D. E., Albert, V. A., Savolainen, V., Hilu, K., Qiu, Y.-L., Chase, M. W., Farris, J. S., Stefanovic, S., Rice, D. W, Palmer, J. D., and Soltis, P. S. 2004. Genome-scale data, angiosperm relationships, and ‘ending incongruence’: a cautionary tale in phylogenetics. Trends Plant Sci. 9:477-483. (PDF)
Palmer, J. D., Chase, M. W., and Soltis, D. E. 2004. The plant tree of life: An overview and some points of view. Amer. J. Bot. 91:1437-1445. (PDF)
Palmer, J. D., Chase, M. W., and Soltis, D. E. (eds.) 2004. The Plant Tree of Life. Special issue of Amer. J. Bot., vol. 91, issue 10, 303 pp.
Gerbod, D., Sanders, E., Moriya, S., Noël, C., Takasu, H., Fast, N. M., Delgado-Viscogliosi, P., Ohkuma, M., Kudo, T., Capron, M., Palmer, J. D., Keeling, P. J., and Viscogliosi, E. 2004. Molecular phylogenies of Parabasalia inferred from four different proteins and comparison with rRNA trees. Mol. Phylogenet. Evol. 31:572-580. (PDF)
Qiu, Y.-L. and Palmer, J. D. 2004. Many independent origins of trans-splicing of a plant mitochondrial group II intron. J. Mol. Evol. 59:80-89. (PDF)
Adams, K. L. and Palmer, J. D. 2003. Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus. Mol. Phylogenet. Evol. 29:380-395 (PDF)
Bergthorsson, U., Adams, K. L., Thomason, B., and Palmer, J. D. 2003. Widespread horizontal transfer of mitochondrial genes in flowering plants. Nature 424:197-201. (PDF)
Cummings, M. P., Nugent, J. M., Olmstead, R. G., and Palmer, J. D. 2003. Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms. Curr. Genet. 43:131-138. (PDF)
Palmer, J. D. 2003. The Symbiotic Birth and Spread of Plastids: How Many Times and Whodunit? J. Phycol. 39:4-11. (PDF)
Adams, K. L., Daley, D. O., Whelan, J., and Palmer, J. D. 2002. Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts. Plant Cell 14:931-943. (PDF)
Daley, D. O., Adams, K. L., Clifton, R., Qualmann. S, Millar, A. H., Palmer, J. D., Pratje, E., and Whelan, J. 2002. Gene transfer from the mitochondrion to the nucleus: Novel mechanisms for gene activation from Cox2. Plant J. 30:11-21. (PDF)
Adams, K. L., Qiu, Y.-L., Stoutemyer, M., and Palmer, J. D. 2002. Punctuated evolution of mitochondrial gene content: High and variable rates of mitochondrial gene loss and transfer during angiosperm evolution. Proc. Natl. Acad. Sci. USA 99:9905-9912. (PDF)
Gugerli, F., Sperisen, C., Buchler, U., Brunner, I., Brunner, I., Brodbeck, S., Palmer, J. D., and Qiu, Y.-L. 2001. The evolutionary split of Pinaceae from other conifers: evidence from an intron loss and a multigene phylogeny. Mol. Phylogenet. Evol. 21:167-175. (PDF)
Adams, K. L. Ong, H. C., and Palmer, J. D. 2001. Mitochondrial gene transfer in pieces: Fission of the ribosomal protein gene rpl2 and partial or complete gene transfer to the nucleus. Mol. Biol. Evol. 18:2289-2297. (PDF)
Keeling, P. J. and Palmer, J. D. 2001. Lateral transfer at the whole and sub-genic levels in the evolution of eukaryotic enolase. Proc. Natl. Acad. Sci. USA 98: 10745-10750. (PDF)
Adams, K. L., Rosenblueth, M., Qiu, Y.-L., and Palmer, J. D. 2001. Multiple losses and transfers to the nucleus of two mitochondrial respiratory genes during angiosperm evolution. Genetics 158:1289-1300. (PDF)
Millen, R. S., Olmstead, R. G., Adams, K. L., Palmer, J. D., Lao, N. T., Heggie, L., kavanagh, T. A., Hibberd, J. M., Gray, J. C., Morden, C. W., Calie, P. J., Jermiin, L. S., and Wolfe, K. H. 2001. Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus. Plant Cell 13:645-658. (PDF)
Adams, K. L., Daley, D. O., Qiu, Y.-L., Whelan, J., and Palmer, J. D. 2000. Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants. Nature, 408:354-357. (PDF)
Nickrent, D. L., Parkinson, C. L., Palmer, J. D., and Duff, R. J. 2000. Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants. Mol. Biol. Evol. 17:1885-1895. (PDF)
Palmer, J. D. 2000. A single birth of all plastids? Nature 405:32-33. (PDF)
Palmer, J. D., Adams, K. L., Cho, Y., Parkinson, C. L., Qiu, Y.-L, and Song, K. 2000. Dynamic evolution of plant mitochondrial genomes: mobile genes and introns, and highly variable mutation rates. Proc. Natl. Acad. Sci. USA, 97:6960-6966 (PDF)
Keeling, P. J. and Palmer, J. D. 2000. Parabasalia flagellates are ancient eukaryotes. Nature, 405:635-637. (PDF)
Chaw, S.M., Parkinson, C. L., Cheng, Y., Vincent, T. M., and Palmer, J. D. 2000. Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers. Proc. Natl. Acad. Sci. USA, 97:4086-4091. (PDF)
Besendahl, A., Bhattacharya, Qiu, Y.-L., Lee, J., and Palmer, J. D. 2000. The cyanobacterial origin and vertical evolution of the plastid tRNALeu group I intron. Curr. Genet. 37:12-23. (PDF)
Schisler, N. J. and Palmer, J. D. 2000. The IDB and IEDB: Intron sequence and evolution databases. Nucleic Acids Res. 28:181-184. (PDF)
Olmstead, R. G., J. A. Sweere, R. E. Spangler, L. Bohs, and J. D. Palmer. 1999. Phylogeny and Provisional Classification of the Solanaceae Based on Chloroplast DNA. Pp. 111-137 in Solanaceae IV, Advances in Biology and Utilization, M. Nee, D. E. Symon, J. P. Jessup, and J. G. Hawkes, eds. Royal Botanic Gardens, Kew.
Parkinson, C. L., Adams, K. L., and Palmer, J. D. 1999. Multigene analyses identify the three earliest lineages of extant flowering plants. Curr. Biol. 9:1481-1485. (PDF)
Adams, K. L., Song, K., Roessler, P. G., Nugent, J. M., Doyle, J. L., Doyle, J. J., and Palmer, J.D. 1999. Intracellular gene transfer in action: Dual transcription and multiple silencings of nuclear and mitochondrial cox2 genes in legumes. Proc. Natl. Acad. Sci. USA 96:13863-13868. (PDF)
Turner, S., Pryer, K. M., Miao, V. P. W., and Palmer, J. D. 1999. Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. J. Eukary. Microbiol. 46:327-338.
Cho, Y. and Palmer, J. D. 1999. Multiple acquisitions via horizontal transfer of a group I intron in the mitochondrial coxl gene during evolution of the Araceae family. Mol. Biol. Evol. 16:1155-1165. (PDF)
Knox, E.B. and Palmer, J.D. l999. The chloroplast genome arrangement of Lobelia thuliniana: Expansion of the inverted repeat in an ancestor of the Campanulales. Plant Syst. Evol. 214:49-64.
Qiu, Y.-L. and Palmer, J. D. 1999. Phylogeny of early land plants inferred from genes and genomes. Trends Plant Sci. 4:26-30. (PDF)
Keeling, P. J., Palmer, J. D., Donald, R. G. K., Roos, D. S., Waller, R. F., and McFadden, G. I. 1999. Shikimate in apicomplexa, but not in the plastid. Nature 397:219-220. (PDF)
Adams, K. L., Song, K., Qiu, Y.-L., Shirk, A., Cho, Y., Parkinson, C. L., and Palmer, J.D. 1998. Evolution of flowering plant mitochondrial genomes. Gene content, gene transfer to the nucleus, and highly accelerated mutation rates. In Plant Mitochondria: from Gene to Function, Glaser, E., Gardestrom, P., Glimelius, K., and Moller, I.-M., eds., Backbuys Publishers, Germany, pp. 13-18.
Cho, Y., Adams, K. L., Qiu, Y.-L., Kuhlman, P., Vaughn, J. C., and Palmer, J. D. 1998. A highly invasive group I intron in the mitochondrial coxl gene. In Plant Mitochondria: from Gene to Function, Glaser, E., Gardestrom, P., Glimelius, K., and Moller, I.-M., eds., Backhuys Publishers, Germany, pp. 19-23.
Cho, Y., Qiu, Y.-L., Kuhlman, P., and Palmer, J. D. 1998. Explosive invasion of plant mitochondria by a group I intron. Proc. Natl. Acad. Sci. USA 95:14244-14249. (PDF)
Knox, E.B. and Palmer, J.D. 1998. Chloroplast DNA evidence on the origin and radiation of the giant lobelias in eastern Africa. Syst. Bot. 23:109-149. (PDF)
Palmer, J.D. and Delwiche, C.F. 1998. The origin and evolution of plastids and their genomes. In Molecular Systematics of Plants II, D.E. Soltis, P.S. Soltis and J.J. Doyle, eds., Kluwer, Boston, pp. 375-409.
Qiu, Y.-L., Cho, Y, Cox, J. C., and Palmer, J. D. 1998. The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Nature 394:671-674. (PDF)
Delwiche, C.F. and Palmer, J.D. 1997. The origin of plastids and their spread via secondary symbiosis. In The Origins of Algae and Their Plastids, D. Bhattacharya, ed., Springer-Verlag, pp. 53-86.
Olmstead, R.G. and Palmer, J.D. 1997. Implications for the phylogeny, classification, and biogeography of Solanum from cpDNA restriction site variation. Syst. Bot. 22:19-29. (PDF)
Stoltzfus, A., Logsdon, J.M. Jr., Palmer, J.D., and Doolittle, W.F. 1997. Intron "sliding" and the diversity of intron positions. Proc. Natl. Acad. Sci. USA 94:10739-10744. (PDF)
Chase, M.W. and Palmer, J.D. 1997. Leapfrog radiation in floral and vegetative traits among twig epiphytes of the orchid subtribe Oncidiinae. In Molecular Evolution and Adaptive Radiation, Givnish, T.J. and Sytsma, K.J., eds., Cambridge Univ. Press, NY, pp. 331-350.
Cosner, M.E., Jansen, R.K., Palmer, J.D., and Downie, S.R. 1997. The highly rearranged chloroplast genome of Trachelium caeruleum (Campanulaceae): multiple inversions, inverted repeat expansion and contraction, transposition, insertions/deletions, and several repeat families. Curr. Genet. 31:419-429. (PDF)
Palmer, J.D. 1997. The mitochondrion that time forgot. Nature 387:454-455. (PDF)
Stassen, N.Y., Logsdon, J.M. Jr., Vora, G., Offenberg, H.H., Palmer, J.D., and Zolan, M.E. 1997. Isolation and characterization of RAD51 orthologs from Coprinus cinereus and Lycopersicon esculentum, and phylogenetic analysis of eukaryotic recA homologs. Curr. Genet. 31:144-157. (PDF)
Köhler, S., Delwiche, C.F., Tilney, L.G., Webster, P., Wilson, R.J.M., Palmer, J.D. and Roos, D.S. 1997. A plastid of probable green algal origin in apicomplexan parasites. Science 275:1485-1489. (PDF)
Palmer, J.D. 1997. Organelle genomes: going, going, gone! Science 275:790-791. (PDF)
Palmer, J.D. 1996. Rubisco surprises in dinoflagellates. Plant Cell 8:343-345. (PDF)
Palmer, J.D. and Delwiche, C.R. 1996. Second-hand chloroplasts and the case of the disappearing nucleus. Proc. Natl. Acad. Sci. USA 93:7432-74. (PDF)
Baldauf, S. L., Palmer, J. D., and Doolittle, W. F. 1996. The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proc. Natl. Acad. Sci. USA 93:7749-7754. (PDF)
Delwiche, C. and Palmer, J. D. 1996. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol. Biol. Evol. 13:873-882. (PDF)
Dowling, T., Moritz, C., Palmer, J. D., and Rieseberg, L. 1996. Nucleic Acids II: Restriction SiteAnalysis. In: Molecular Systematics (2nd edition), eds. D. M. Hillis and C. Moritz, Sinauer Associates, pp. 249-320.
Doyle, J. J., Doyle, J. L., Ballenger, J. A., and Palmer, J. D. 1996. The distribution and phylogenetic significance of a 50 kb chloroplast DNA inversion in the flowering plant family Leguminosae. Mol. Phylogen. Evol. 5:429-438.
Barns, S. M., Delwiche, C. F., Palmer, J. D., and Pace, N. R. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93:9188-9193. (PDF)
Palmer, J. D. 1995. Rubisco rules fall; gene transfer triumphs. Bioessays 17:1005-1008.
Kuhlman, P. and Palmer, J. D. 1995. Isolation, expression, and evolution of the gene encoding mitochondrial elongation factor Tu in Arabidopsis thaliana. Plant Mol. Biol. 29:945-958.
Vaughan, J. C., Mason, M. T., Sper-Whitis, G. L., Kuhlman, P. and Palmer, J. D. 1995. Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of Peperomia. J. Mol. Evol. 41:563-572.
Ems, S. C., Morden, C. W., Dixon, C. K., Wolfe, K. H., dePamphilis, C. W., and Palmer, J. D. 1995. Transcription, splicing, and editing of plastic RNAs in the nonphotosynthetic plant Epifagus virginiana. Plant Mol. Biol. 29:721-733.
Knox, E. B. and Palmer, J. D. 1995. The origin of Dendrosenecio within the senecioneae (Asteraceae) based on chloroplast DNA evidence. Amer. J. Bot. 82:1567-1573. (PDF)
Knox, E. B. and Palmer, J. D. 1995. Chloroplast DNA variation and the recent radiation of the giant senecios (Asteraceae) on the tall mountains of eastern Africa. Proc. Natl. Acad. Sci. USA 92:10349- 10353. (PDF)
Doyle, J. J., Doyle, J. L., and Palmer, J. D. 1995. Multiple independent losses of two genes and one intron from legume chloroplast genomes. Syst. Bot. 20:272-294. (PDF)
Delwiche, C. F., Kuhsel, M., and Palmer, J. D. 1995. Phylogenetic analysis of tufA sequences indicates a cyanobacterial origin of all plastids. Mol. Phylogen. Evol. 4:110-128.
Logsdon, J. M., Jr., Tyshenko, M. G., Dixon, C., D-Jafari, J., Walker, V. K., and Palmer, J. D. 1995. Seven newly discovered intron positions in the triose-phosphate isomerase gene: Evidence for the introns-late theory. Proc. Natl. Acad. Sci. USA 92:8507-8511. (PDF)
Olmstead, R.G. and J.D. Palmer. 1994. Chloroplast DNA systematics: A review of methods and data analysis. Amer. J. Bot. 1205-1224.
Logsdon, J.R. Jr. and J.D. Palmer. 1994. Origin of introns - early or late? Nature 369:526. (PDF)
Downie, S.R., D.S. Katz-Downie, K.H. Wolfe, P.J. Calie and J.D. Palmer. 1994. Structure and evolution of the largest chloroplast gene (ORF2280): Internal plasticity and multiple gene loss during angiosperm evolution. Curr. Genet. 25:367-378.
Hoot, S.B. and J.D. Palmer. 1994. Structural rearrangements, including parallel inversions, within the chloroplast genome of Anemone and related genera. J. Molec. Evol. 38:274-281.
Downie, S.R. and J.D. Palmer. 1994. A chloroplast DNA phylogeny of the Caryophyllales based on structural and inverted repeat restriction site variation. Syst. Bot. 19:236-252. (PDF)
Palmer, J.D., S.R. Downie, J.M. Nugent, R. Brandt, M. Unseld, A. Brennicke, W. Schuster and T. Borner. 1994. The chloroplast and mitochondrial DNAs of Arabidopsis thaliana: conventional genomes in an unconventional plant. In: Arabidopsis. Eds. Meyerowitz, E. and C. Somerville. Cold Spring Harbor Laboratory Press, NY, pp. 37-67.
Price, R.A., I.A. Al-Shehbaz and J.D. Palmer. 1994. Systematic relationships of Arabidopsis: A molecular and morphological perspective. In: Arabidopsis. Eds. Meyerowitz, E. and C. Somerville. Cold Spring Harbor Laboratory Press, NY, pp. 7-19.
Downie, S.R. and J.D. Palmer. 1994. Phylogenetic relationships of the Caryophyllales using restriction site variation of the chloroplast DNA inverted repeat. In: Evolution and Systematics of the Caryophyllales. Eds., Behnke, H.D. and T.J. Mabry. Springer-Verlag, Heidelberg, pp. 223-233.
Hoot, S.B., A.A. Reznicek and J.D. Palmer. 1994. Phylogenetic relationships in Anemone (Ranunuculaceae) based on morphology and chloroplast DNA. Syst. Bot. 19:169-200. (PDF)
Palmer, J.D. 1993. A genetic rainbow of plastids. Nature 364:762-763. (PDF)
Chase, M.W., D.E. Soltis, R.G. Olmstead, D. Morgan, D.H. Les, B.D. Mishler, M.R. Duvall, R.A. Price, H.G. Hills, Y.-L. Qiu, K.A. Kron, E.C. Rettig, J.D. Palmer, J.R. Manhart, K.J. Sytsma, H.J. Michaels, W.J. Kress, K.G. Karol, W.D. Clark, M. Hedren, B.S. Gaut, R.K. Jansen, K.-J. Kim, C.F. Simpee, J.F. Smith, G.R. Fumier, S.H. Strauss, Q.-Y. Xiang, G.M. Plunkett, P.S. Soltis, S. Swensen, L.E. Eguiarte, G.H. Learn, Jr., S.C.H. Barrett, S. Graham, S. Dayanandan and V.A. Albert. 1993. Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastic gene rbcL. Ann. Missouri. Bot. Gard. 80:528-580. (PDF)
Baldauf, S.L. and J.D. Palmer. 1993. Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins. Proc. Natl. Acad. Sci. 90:11558-11562. (PDF)
Olmstead, R.G., B. Bremer, K.M. Scott and J.D. Palmer. 1993. A parsimony analysis of the Asteridae sensu lato based on rbcL sequences. Ann. Missouri Bot. Gard. 80:700-722.
Nugent, J.M. and J.D. Palmer. 1993. Evolution of gene content and gene organization in flowering plant mitochondrial DNA: A general survey and further studies on coxII gene transfer to the nucleus. In Brennicke, A. & U. Kuck, eds. Plant Mitochondria. VCH Publ., Weinheim, pp. 163-170.
Knox, E., S.R. Downie and J.D. Palmer. 1993. Chloroplast genome rearrangements and the evolution of giant lobelias from herbaceous ancestors. Mol. Biol. Evol. 10:414-430. (PDF)
Rodman, J., R.A. Price, K. Karol, E. Conti, K.J. Sytsma and J.D. Palmer. 1993. Nucleotide sequences of the rbcL gene indicate monophyly of mustard oil plants. Ann. Missouri Bot. Gard. 80:686-699.
Michaels, H.J., K.M. Scott, R.G. Olmstead, T. Szaro, R.K. Jansen and J.D. Palmer. 1993. Interfamilial relationships of the Asteraceae: Insights from rbcL sequence variation. Ann. Missouri Bot. Gard. 80:742-751.
Price, R.A. and J.D. Palmer. 1993. Phylogenetic relationships of the geranianceae and geraniales from rbcL sequence comparisons. Ann. Missouri Bot. Gard. 80:661-671. (PDF)
Nugent, J.M. and J.D. Palmer. 1993. Characterization of the Brassica campestris mitochondrial gene for subunit six of NADH dehydrogenase: nad6 is present in the mitochondrion of a wide range of flowering plants. Curr. Genet. 23:148-153.
Bremer, K., R.K. Jansen, P.O. Karis, M. Kallersjo, S. Keeley, K.-J. Kim, H.J. Michaels, J.D. Palmer and R.S. Wallace. 1992. A review of the phylogeny and classification of the Asteraceae. Nord. J. Bot. 12:141-148.
Morden, C.W., C.F. Delwiche, M. Kuhsel and J.D. Palmer. 1992. Gene phylogenies and the endosymbiotic origin of plastids. Biosystems 28:75-90.
Wolfe, H.H., C.W. Morden, S. Ems and J.D. Palmer. 1992. Rapid evolution of the plastic translational apparatus in a nonphotosynthetic plant. Loss or accelerated sequence evolution of tRNA and ribosomal protein genes. J. Molec. Evol. 35:304-317.
Palmer, J.D. 1992. Green Ancestry of malarial parasites? Curr. Biol. 2:318-320.
Wolfe, K.H., C.W. Morden and J.D. Palmer. 1992. Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. Proc. Natl. Acad. Sci. USA 89:10648-10652. (PDF)
Palmer, J.D. 1992. Organelle DNA isolation and RFLP analysis. In: Plant Genomes: Methods for Genetic and Physical Mapping, eds. T.C. Osborn and J.S. Beckmann, Academic Press, pp. 35-53.
Bourne, C.M., J.D. Palmer and E.G. Stoermer. 1992. Organization of the chloroplast genome of the freshwater centric diatom Cyclotella meneghiniana (Bacillariophyceae). J. Phycol. 28:347-355.
Wolfe, K.H., D.S. Katz-Downie, C.W. Morden and J.D. Palmer. 1992. Evolution of the plastid ribosomal RNA operon in a nongreen parasitic plant: Accelerated sequence evolution, altered promoter structure, and tRNA pseudogenes. Plant Molec. Biol.. 18: 1037-1048.
Gass, D.A., C.A. Makaroff and J.D. Palmer. 1992. Variable intron content of the NADH dehydrogenase subunit 4 gene of plant mitochondria. Curr. Genet. 21:423-430.
Olmstead, R.G., K.M. Scott and J.D. Palmer. 1992. A chloroplast DNA phylogeny for the Asteridae: Implications for the Lamiales. In R.J. Harley and T. Reynolds (eds.), Advances in Labiate Science, Royal Botanic Gardens, Kew, pp. 19-25.
Kim, K.J., R.K. Jansen, R.S. Wallace, H.J. Michaels and J.D. Palmer. 1992. Phylogenetic implications of rbcL sequence variation in the Asteraceae. Annals Missouri Bot. Gard. 79:428-445.
Donoghue, M.J., R.G. Olmstead, J.F. Smith and J.D. Palmer. 1992. Phylogenetic relationships of Dipsacales based on rbcL sequences. Ann. Missouri Bot. Gard. 79:333-345.
Olmstead, R.G., H.J. Michaels, K. Scott and J.D. Palmer. 1992. Monophyly of the Asteridae and identification of its major lineages inferred from rbcL sequences. Ann. Missouri Bot. Gard. 79:249-265.
Olmstead, R.G. and J.D. Palmer. 1992. A chloroplast DNA phylogeny of the Solanaceae: subfamilial relationships and character evolution. Ann. Missouri Bot. Gard. 79:346-360.
Downie, S.R. and J.D. Palmer. 1992. Restriction site mapping of the chloroplast DNA inverted repeat: a molecular phylogeny of the Asteridae. Ann. Missouri Bot. Gard. 79:266-283.
Palmer. J.D., D. Soltis and P. Soltis. 1992. Large size and complex structure of mitochondrial DNA in two nonflowering land plants. Curr. Genet. 21:125-129.
Wolfe, K.H., C.W. Morden and J.D. Palmer. 1992. The small single-copy region of plastid DNA in the nonphotosynthetic angiosperm Epifagus virginiana contains only two genes: differences among dicots, monocots, and bryophytes in gene organization at a non-bioenergetic locus. J. Mol. Biol. 223:95-104.
Jansen, R.K., H.J. Michaels, R.S. Wallace, K.-J. Kim, S.C. Keeley, L.E. Watson and J.D. Palmer. 1992. Chloroplast DNA variation in the Asteraceae: phylogenetic and evolutionary implications. In: Molecular Systematics of Plants, D. Soltis, P. Soltis and J.J. Doyle, eds., Chapman and Hall, ch. 11, pp. 252-279.
Crawford, D.J., J.D. Palmer and M. Kobayashi. 1992. Chloroplast DNA restriction site variation and the evolution of the annual habit in North American Coreopsis (Asteraceae). In: Molecular Systematics of Plants, D. Soltis, P. Soltis and J.J. Doyle, eds., Chapman and Hall, pp. 280-294.
Chase, M. and J.D. Palmer. 1992. Floral morphology and chromosome number in the subtribe Oncidiinae (Orchidaceae): evolutionary insights from a phylogenetic analysis of chloroplast DNA restriction site variation. In: Molecular Systematics of Plants, D. Soltis, P. Soltis and J.J. Doyle, eds., Chapman and Hall, ch. 14, pp. 324-337.
Downie, S.R. and J.D. Palmer. 1992. Use of chloroplast DNA rearrangements in reconstructing plant phylogeny. In: Molecular Systematics of Plants, D. Soltis, P. Soltis and J.J. Doyle, eds., Chapman and Hall, pp. 14-35.
Palmer, J.D. 1992. Mitochondrial DNA in plant systematics: applications and limitations. In: Molecular Systematics of Plants, D. Soltis, P. Soltis and J.J. Doyle, eds., Chapman and Hall, pp. 36-49.
Palmer, J.D. 1992. Comparison of chloroplast and mitochondrial genome evolution in land plants. In: Plant Gene Research, Vol. 6, Organelles, ed. R.G. Herrmann, SpringerVerlag, pp. 99-133.
Olmstead, R. and J.D. Palmer. 1991. Chloroplast DNA and systematics of the Solanaceae. In: Solanaceae III: Taxonomy, Chemistry, Evolution, Eds. J.G. Hawkes, R.N. Lester, M. Nee and N. Estrada-R, Royal Botanic Gardens, KEW, pp. 161-168.
Taylor, G.W., K.H. Wolfe, C.W. Morden, C.W. dePamphilis and J.D. Palmer. 1991. Lack of a functional tRNA-Cys gene is associated with loss of photosynthesis in a lineage of parasitic plants. Curr. Genet. 20:515-518.
Wolfe, K.H., C.W. Morden and J.D. Palmer. 1991. Ins and outs of plastic genome evolution. Curr. Opin. Genet. Devel. I :520-525.
Palmer, J.D. and J.M. Logsdon, Jr. 1991. The recent origins of introns. Curr. Opin. Genet. Devel. 1:470-477.
Downie, S.R., R.G. Olmstead, G. Zurawski, D.E. Soltis, P.S. Soltis, J.C. Watson and J.D. Palmer. 1991. Six independent losses of the chloroplast rp12 intron in dicotyledons: molecular and phylogenetic implications. Evolution 45:1245-1259.
Morden, C.W., K.H. Wolfe, C.W. dePamphilis and J.D. Palmer. 1991. Plastid translation and transcription genes in a nonphotosynthetic plant: intact, missing and pseudo genes. EMBO J. 10:3281-3288.
Gantt, J.S., S.L. Baldauf, P.J. Calie, N.F. Weeden and J.D. Palmer. 1991. Transfer of rp122 to the nucleus greatly preceded its loss from the chloroplast and involved the gain of an intron. EMBO J. 10:3073-3078.
Nugent, J.M. and J.D. Palmer. 1991. RNA-mediated transfer of the gene coxII from the mitochondrion to the nucleus during flowering plant evolution. Cell 66:473-481.
Makaroff, C.A., I.J. Apel and J.D. Palmer. 1991. The role of coxI-associated repeated sequences in plant mitochondrial DNA rearrangements and radish cytoplasmic male sterility. Curr. Genet. 19: 183-190.
Crawford, D.J., J.D. Palmer and M. Kobayashi. 1991. Chloroplast DNA restriction site variation, phylogenetic relationships and character evolution among sections of North American Coreopsis (Asteraceae). Syst. Bot. 16:211-224.
Palmer, J.D. 1991. Plastid chromosomes: structure and evolution. In: Cell Culture and Somatic Genetics of Plant, Vol. 7A, Molecular Biology of Plastids, eds. L. Bogorad and I.K. Vasil, Academic Press, San Diego, pp. 5-53.
Jansen, R.K., H.J. Michaels and J.D. Palmer. 1991. Phylogeny and character evolution in the Asteraceae based on chloroplast DNA restriction site mapping. Syst. Bot. 16:98-115.
Shirzadegan, M., J.D. Palmer, M. Christey and E.D. Earle. 1991. Patterns of mitochondrial DNA instability in Brassica campestris cultured cells. Plant Molec. Biol. 16:21-37.
Makaroff, C.A., I.J. Apel and J.D. Palmer. 1990. Characterization of radish mitochondrial atpA: Influence of nuclear background on transcription of atpA-associated sequences and relationship with male sterility. Plant Molec. Biol. 15:735-747.
Price, R.A., P.J. Calie, S.R. Downie, J.M. Logsdon, Jr. and J.D. Palmer. 1990. Chloroplast DNA variation in the Geraniaceae - a preliminary report. In: Proceedings of the International Geraniaceae Symposium, ed. P. Vorster, pp. 235-242.
Dowling, T., C. Moritz and J.D. Palmer. 1990. Nucleic Acids II: Restriction Site Analysis. In: Molecular Systematics, eds. D.M. Hillis and C. Moritz, Sinauer Associates, pp. 250-317.
Manhart, J.R., R.W. Hoshaw and J.D. Palmer. 1990. Unique chloroplast genome in Spirogvra maxima (Chlorophyta) revealed by physical and gene mapping. J. Phycol. 26:490-494.
Olmstead, R.G., R.K. Jansen, H.J. Michaels, S.R. Downie and J.D. Palmer. 1990. Chloroplast DNA and phylogenetic studies in the Asteridae. In: Proceedings of the Fourth International Symposium of Plant Biosystematics, ed. S. Kawano, pp. 119-134.
Crawford, D.J., J.D. Palmer and M. Kobayashi. 1990. Chloroplast DNA restriction site variation, evolution and phylogeny of Coreopsis section Coreopsis (Asteraceae). Amer. J. Bot. 77:552-558.
Bruneau, A., Doyle, J.J. and J.D. Palmer. 1990. A chloroplast DNA inversion as a subtribal character in the Phaseoleae (Leguminosae). Syst. Bot. 15:378-386.
Palmer, J.D. 1990. Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet. 6:115-120.
Lavin, M., Doyle, J.J. and J.D. Palmer. 1990. Evolutionary significance of the loss of the chloroplast DNA inverted repeat in the Leguminosae subfamily Papilionoideae. Evolution 44:390-392.
Kuhsel, M.G., Strickland, R. and J.D. Palmer. 1990. An ancient group I intron shared by eubacteria and chloroplasts. Science 250: 1570-1573.
Jansen, R.K., Holsinger, K.E., Michaels, H.J. and J.D. Palmer. 1990. Phylogenetic analysis of chloroplast DNA restriction site data at higher taxonomic levels: An example from the Asteraceae. Evolution 44:2089-2105.
dePamphilis, C.W. and J.D. Palmer. 1990. Loss of photosynthetic and chlororespiratory genes from the plastic genome of a parasitic flowering plant. Nature 348:337-339.
Manhart J.R. and J.D. Palmer. 1990. The gain of two tRNA introns marks the green algal ancestors of land plants. Nature 345:268-270.
Baldauf, S.L., Manhart, J.R. and J.D. Palmer. 1990. Different fates of the chloroplast tufA gene following its transfer to the nucleus in green algae. Proc. Natl. Acad. Sci. USA 87:5317-5321.
Baldauf, S.L. and J.D. Palmer. 1990. Evolutionary transfer of the chloroplast tufA gene to the nucleus. Nature 344:262-265.
Palmer, J.D., P.J. Calie, C.W. dePamphilis, J.M. Logsdon, Jr., D.S. Katz-Downie and S.R. Downie. 1990. An evolutionary genetic approach to understanding plastic gene function: Lessons from photosynthetic and nonphotosynthetic plants. In: Proceedings of the VIIIth International Congress on Photosynthesis. Kluwer Academic Publ., Dordrecht, Netherlands, pp. 475-482.
Palmer, J.D., C.A. Makaroff, I.J. Apel and M. Shirzadegan. 1990. Fluid structure of plant mitochondrial genomes: Evolutionary and functional implications. In: Molecular Evolution. UCLA Symposia on Molecular and Cellular Biology, New Series. Alan R. Liss, Inc., New York. Vol. 122, pp. 85-96.
Palmer, J.D., S.L. Baldauf, P.J. Calie and C.W. dePamphilis. 1990. Chloroplast gene instability and transfer to the nucleus. In: Molecular Evolution. UCLA Symposia on Molecular and Cellular Biology, New Series, Alan R. Liss, Inc., New York. Vol 122, pp. 97-106.
dePamphilis, C.W. and J.D. Palmer. 1989. Evolution and function of plastid DNA: A review with emphasis on non- photosynthetic plastics. In: Physiology, Biochemistry, and Genetics of Nongreen Plastids. Eds., Boyer, C. D., Shannon, J. C. and Hardison, R. C. Amer. Soc. Plant Physiol., Rockville, Maryland, pp. 182-202.
Chase, M.W. and J.D. Palmer. 1989. Chloroplast DNA systematics of liliod monocots: Resources, feasibility, and an example from the Orchidaceae. Amer. J. Bot. 76:1720-1730.
Milligan, B.G., J. Hampton and J.D. Palmer. 1989. Dispersed repeats and structural reorganization in subclover chloroplast DNA. Mol. Biol. Evol. 6:355-368.
Makaroff, C.A., I.J. Apel and J.D. Palmer. 1989. The atp6 coding region has been disrupted and a novel reading frame generated in the mitochondrial genome of the cytoplasmic male-sterile Ogura radish. J. Biol. Chem. 264:11706-11713.
Bruns, T.D., R.D. Fogel, T.J. White and J.D. Palmer. 1989. Accelerated evolution of a false-truffle from a mushroom ancestor. Nature 339:140-142.
Manhart, J.R, K. Kelly, B.S. Dudock and J.D. Palmer. 1989. Unusual characteristics of Codium vulgare chloroplast DNA revealed by physical and gene mapping. Mol. Gen. Genet. 216:417-421.
Johnson, L.B. and J.D. Palmer, J. D. 1989. Heteroplasmy of chloroplast DNA in Medicago. Plant Mol. Biol. 12:3-11.
Shirzadegan, M., M. Christey, E.D. Earle and J.D. Palmer. 1989. Rearrangement, amplification, and sorting out of mitochondrial DNA molecules in cultured cells of Brassica campestris. Theor. Appl. Genet. 77:17-25.
Bruns, T.D. and J.D. Palmer. 1989. Evolution of mushroom mitochondrial DNA: Suillus and related genera. J. Mol. Evol. 28:349-362.
Palmer, J.D., R.K. Jansen, H. Michaels, J. Manhart and M.W. Chase. 1988. Phylogenetic analysis of chloroplast DNA variation. Ann. Missouri Bot. Gard. 75:1180-1218.
Nugent, J. and J.D. Palmer. 1988. Location, identity, amount and serial entry of chloroplast DNA sequences in crucifer mitochondrial DNAs. Curr. Genet. 14:501-509.
Palmer, J.D. and L.A. Herbon. 1988. Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence. J. Mol. Evol. 28:87-97.
Woodbury, N.W., L.L. Roberts, J.D. Palmer and W.F. Thompson. 1988. A transcription map of the pea chloroplast genome. Curr. Genet. 14:75-89.
Palmer, J.D., B. Osorio and W.F. Thompson. 1988. Evolutionary significance of inversions in legume chloroplast DNAs. Curr. Genet. 14:65-74.
Howe, G.T., S.H. Strauss, A.H. Doerksen and J.D. Palmer. 1988. Gene and restriction site maps of Douglas-fir and radiate pine chloroplast genomes. In: Molecular Genetics of Forest Trees, eds. W. M. Cheliak and A. C. Yapa, Publications Distribution Centre, Chalk River, Ontario, pp. 54-66.
Siculella, L. and J.D. Palmer. 1988. Physical and gene organization of mitochondrial DNA in fertile and male sterile sunflower: CMS associated alterations in structure and transcription of the atpA gene. Nucleic Acids Res. 16:3787-3799.
Strauss, S.H., J.D. Palmer, G.T. Howe and A.H. Doerksen. 1988. Chloroplast genomes of two conifers lack an inverted repeat and are extensively rearranged. Proc. Natl. Acad. Sci. USA, 85:3898-3902.
Jansen, R.K. and J.D. Palmer. 1988. Phylogenetic implications of chloroplast DNA restriction site variation in the Mutisieae (Asteraceae). Amer. J. Bot. 75:751-764.
Makaroff, C.A. and J.D. Palmer. 1988. Mitochondrial DNA rearrangements and transcriptional alterations in the Ogura male-sterile cytoplasm of radish. Mol. Cell Biol. 8:1474-1480.
Bruns, T.D., J.D. Palmer, D.S. Shumard, L.I. Grossman and M.E.S. Hudspeth. 1988. Mitochondrial DNAs of Suillus: Three-fold size changes in molecules that share a common gene order. Curr. Genet. 13:49-56.
Rieseberg, L., D. Soltis and J.D. Palmer. 1988. A molecular re-examination of introgression between Helianthus annuus and H. bolanderi (Compositae). Evolution 42:227-238.
Palmer, J.D. 1988. Intraspecific variation and multicircularity in Brassica mitochondrial DNAs. Genetics 118:341-351.
Robertson, D., E.D. Earle, M.A. Mutschler and J.D. Palmer. 1987. Analysis of organelle genomes in a somatic hybrid derived from cytoplasmic male sterile Brassica oleracea and atrazine resistant B. campestris. Theor. Appl. Genet. 74:303-309.
Palmer, J.D. 1987. Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation. Amer. Natur. 130:S6-S29.
Makaroff, C.A. and J.D. Palmer. 1987. Extensive, mitochondrial-specific transcription of the Brassica campestris mitochondrial genome. Nucleic Acids Res. 15:5141-5156.
Jansen, R.K. and J.D. Palmer. 1987. A chloroplast DNA inversion marks an ancient evolutionary split in the sunflower family (Asteraceae). USA Proc. Natl. Acad. Sci. 84:5818-5822.
Jansen, R.K. and J.D. Palmer. 1987. Chloroplast DNA from lettuce and Barnadesia (Asteraceae): Structure, gene localization, and characterization of a large inversion. Curr. Genet. 11:553-564.
Palmer, J.D. and L.A. Herbon. 1987. Unicircular structure of the Brassica hirta mitochondrial genome. Curr. Genet. 11:565-570.
Palmer, J.D., B. Osorio, J. Aldrich and W.F. Thompson. 1987. Chloroplast DNA evolution among legumes: Loss of a large inverted repeat occurred prior to other sequence rearrangements. Curr. Genet. 11:275-286.
Palmer, J.D., J.M. Nugent and L.A. Herbon. 1987. Unusual structure of geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions and new repeat families. Proc. Natl. Acad. Sci. USA 84:769-773.
Aldrich, J., B. Cherney, E. Merlin and J.D. Palmer. 1986. Sequence of the rbcL gene for the large subunit of ribulose bisphosphate carboxylase-oxygenase from alfalfa. Nucleic Acids Res. 14:9535.
Aldrich, J., Cherney, B., Merlin, E. and Palmer, J. D. 1986. Sequence of the rbcL gene for the large subunit of ribulose bisphosphate carboxylase-oxygenase from petunia. Nucleic Acids Res. 14:9534.
Palmer, J.D. and L.A. Herbon. 1986. Tricircular mitochondrial genomes of Brassica and Raphanus: Reversal of repeat configurations by inversion. Nucleic Acids Res. 14:9755-9765.
Stein, D.B., J.D. Palmer and W.F. Thompson. 1986. Structural evolution and flip-flop recombination of chloroplast DNA in the fern genus Osmunda. Curr. Genet. 10:835-841.
Palmer, J.D. and D.B. Stein. 1986. Conservation of chloroplast genome structure among vascular plants. Curr. Genet. 10:823-833.
Stern, D.B. and J.D. Palmer. 1986. Tripartite mitochondrial genome of spinach: Physical structure, mitochondrial gene mapping, and location of transposed chloroplast DNA sequences. Nucleic Acids. Res. 14:5651-5666.
Palmer, J.D. 1986. Chloroplast DNA and phylogenetic relationships. In "DNA Systematics: Evolution", Dutta, S. K. (ed.), CRC Press, Inc., Boca Raton, Florida, pp. 63-80.
Palmer, J.D. 1986. Isolation and structural analysis of chloroplast DNA. Methods Enzymol.118: 167-186.
Palmer, J.D. 1985. Comparative organization of chloroplast genomes. Ann. Rev. Genet. 19:325-354.
Palmer, J.D. 1985. Evolution of chloroplast and mitochondrial DNA in plants and algae. In "Monographs in Evolutionary Biology: Molecular Evolutionary Genetics", MacIntryre, R. J. (ed.), Plenum Publishing Corp., New York, NY, pp. 131-240.
Palmer, J.D. 1985. Chloroplast DNA and molecular phylogeny. Bioessays 2:263-267.
Palmer, J.D., J.E. Boynton, N.W. Gillham and E.H. Harris. 1985. Evolution and recombination of the large inverted repeat in Chlamydomonas chloroplast DNA. In "Molecular Biology of the Photosynthetic Apparatus", Arntzen, C., Bogorad, L., Bonitz, S. and Steinback, K. (eds.), Cold Spring Harbor, NY, pp. 269-278.
Palmer, J.D., R.A. Jorgensen and W.F. Thompson. 1985. Chloroplast DNA variation and evolution in Pisum: patterns of change and phylogenetic analysis. Genetics 109:195-213.
Stern, D.B. and J.D. Palmer. 1984. Recombination sequences in plant mitochondrial genomes: Diversity and homologies to known mitochondrial genes. Nucleic Acids Res. 12:6141-6157.
Palmer, J.D., B. Osorio, J.C. Watson, H. Edwards, J. Dodd and W.F. Thompson. 1984. Evolutionary aspects of chloroplast genome expression and organization. "Biosynthesis of the photosynthetic apparatus: Molecular biology, development and regulation". Thornber, J. P., Staehelin, L. A. and Hallick, R. B. (eds.), UCLA Symposia on Molecular and Cellular Biology, New Series, Alan R. Liss, Inc., New York, NY, Vol. 14:273-283.
Stern, D.B. and J.D. Palmer. 1984. Extensive and widespread homologies between mitochondrial DNA and chloroplast DNA in plants. Proc. Natl. Acad. Sci. USA 81:1946-1950.
Palmer, J.D. and C.R. Shields. 1984. Tripartite structure of the Brassica campestris mitochondrial genome. Nature 307:437-440.
Stern, D.B., J.D. Palmer, W.F. Thompson and D.M. Lonsdale. 1983. Mitochondrial DNA sequence evolution and homology to chloroplast DNA in angiosperms. In "Plant Molecular Biology", Goldberg, R. B. (ed.), UCLA Symposia on Molecular and Cellular Biology, New Series, Alan R. Liss, Inc., New York, NY, Vol. 12:467-477.
Berry, J.A., M.A. Nobs, B. Osorio, J.D. Palmer, J. Tepperman and W.F. Thompson. 1983. Genetic control of the kinetic parameters of RuP2 carboxylase: Studies of a C3 and a C4 species and their Fl hybrid. Carnegie Institution Year Book 82:96-99.
Thompson, W.F., M. Everett, N.O. Polans, R.A. Jorgensen and J. D. Palmer. 1983. Phytochrome control of RNA levels in developing pea and mung bean leaves. Planta 158:487-500.
Palmer, J.D., C.R. Shields, D.B. Cohen and T.J. Orton. 1983. An unusual mitochondrial DNA plasmid in the genus Brassica. Nature 301:725-728.
Palmer, J.D., C.R. Shields, D.B. Cohen and T.J. Orton. 1983. Chloroplast DNA evolution and the origin of amphidiploid Brassica. Theor. Appl. Genet. 65:181-189.
Palmer, J.D., G.P. Singh and D.T.N. Pillay. 1983. Structure and sequence evolution of three legume chloroplast DNAs. Mol. Gen. Genet. 190:5-12.
Palmer, J.D. 1983. Chloroplast DNA exists in two orientations. Nature 301:92-93.
Palmer, J.D., B. Osorio, W.F. Thompson and M.A. Nobs. 1982. Chloroplast DNA evolution in Atriplex. Carnegie Institution Year Book 81:96-97.
Palmer, J.D., H. Edwards, R.A. Jorgensen and W.F. Thompson. 1982. Novel evolutionary variation in transcription and location of two chloroplast genes. Nucleic Acids Res. 10:6819-6832.
Palmer, J.D. and D.B. Stein. 1982. Chloroplast DNA from the fern Osmunda cinnamomea: Physical organization, gene localization and comparison to angiosperm chloroplast DNA. Curr. Genet. 5:165-170.
Palmer, J.D. and D. Zamir. 1982. Chloroplast DNA evolution and phylogenetic relationships in Lycopersicon. Proc. Natl. Acad. Sci. USA 79:5006-5010.
Palmer, J.D. and W.F. Thompson. 1982. Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost. Cell 29:537-550.
Palmer, J.D. 1982. Physical and gene mapping of chloroplast DNA from Atriplex triangularis and Cucumis saliva. Nucleic Acids Res. 10:1593-1605.
Palmer, J.D. and W.F. Thompson. 1981. Clone banks of mung bean, pea and spinach chloroplast DNA. Gene 15:21-26.
Palmer, J.D. and W.F. Thompson. 1981. Rearrangements in the chloroplast genomes of mung bean and pea. Proc. Natl. Acad. Sci. USA 78:5533-5537.
Palmer, J.D. and W.F. Thompson. 1980. Studies on higher plant chloroplast and mitochondrial DNA. Carnegie Institution Year Book 79:120-123.
Murray, M.G., J.D. Palmer, R.E. Cuellar, and W.F. Thompson. 1979. Deoxyribonucleic acid sequence organization in the mung bean genome. Biochemistry 18:5259-5266.