Faculty & Research
Research Strengths
Genomics and Bioinformatics
Inexpensive whole genome sequencing and other high-throughput technologies are revolutionizing the ways that we address fundamental questions in biology from how organisms evolve to how cells become cancerous. Because of the unprecedented amounts of data these technologies make available, we can begin to address biological questions in their full complexity. Long recognized as a leader in the field of evolutionary biology, Indiana University is now leading the way in applying genome-level analyses to diverse biological questions. Answering those questions is most often an interdisciplinary activity, requiring the skills of statisticians, computer scientists, and bioinformaticians as well as biologists. The Center for Genomics and Bioinformatics supports our efforts by providing next generation DNA sequencing and by helping to create and support these necessary–and exciting–interdisciplinary collaborations. The faculty listed below use genomic and bioinformatic approaches to study diverse problems, including: genome evolution, gene regulatory networks, environmental adaptation, the impact of horizontal gene transfer between organisms, speciation, the evolution of behavior, the human microbiome, and many other aspects of biology. Please check out the web pages of the individual investigators below for more details on the exciting ways IU scientists are applying genomics and bioinformatics to understand life on earth.
| Faculty Member | Contact | Description |
|---|---|---|
Associate Professor of Biology Molecular, Cellular & Developmental Biology | jusandre [at] indiana.edu 856-7577(lab) MY 216B / MY 230 (lab) | Gene regulatory networks controlling sex in arthropods. |
Professor of Biology and Computer Science Molecular, Cellular & Developmental Biology | vbrendel [at] indiana.edu 812-855-7074 SI 205C | |
Clyde Culbertson Professor of Biology Microbiology | ybrun [at] indiana.edu 812-855-8860/5-7239(lab) JH 447G / JH 447F (lab) | Mechanism, regulation, and evolution of bacterial shape, differentiation, and biofilm formation. |
Professor of Biology Molecular, Cellular & Developmental Biology | cherbas [at] indiana.edu 812-855-6273 JH A317 | Drosophila development and genomics; Nuclear receptors. |
Justin (Jeong-Hyeon) Choi Assistant Scientist | jeochoi [at] indiana.edu 812-855-9786 JH 059 | Bioinformatics and Computational Genomics: High-throughput Next Generation Sequence and Tiling Array Analysis |
John Colbourne Associate Scientist, Associate Director, Center for Genomics & Bioinformatics | jcolbour [at] indiana.edu 812-856-0099 MY 160 | Functional genomics for ecology, evolution, and the environmental sciences. |
Professor of Biology Microbiology | plfoster [at] indiana.edu 812-855-4084/5-4054(lab) JH 447E / JH 447A(lab) | Mutagenesis, DNA repair, replication, and recombination. |
Senior Scientist | gilbertd [at] indiana.edu unlisted phone JH 336A | Genome informatics and biology public digital libraries. |
Associate Professor of Biology and Informatics Evolution, Ecology & Behavior | mwh [at] indiana.edu 812-856-7001/6-7016(lab) JH 249B / JH 249 (lab) | Computational and evolutionary genomics; evolution of transcriptional regulation; molecular population genetics. |
Adjunct: Assistant Professor, Medical Sciences | pchollen [at] iupui.edu 812-855-1151 JH 209 | Mechanisms of transcription factor specificity in cancer. |
Professor of Biology Microbiology | dkehoe [at] indiana.edu 812-856-4715 JH A413A | Environmental regulation of gene expression in bacteria. |
Eric Knox Director, IU Herbarium Evolution, Ecology & Behavior | eknox [at] indiana.edu 812-855-9601 JH A313 | Plant evolution, speciation, phylogenetic systematics, chloroplast genome evolution; horizontal gene transfer; flora of Indiana. |
Jay T. Lennon Associate Professor Evolution, Ecology & Behavior | lennonj [at] indiana.edu 856-0962/6-7235(lab) JH 341/JH 343(lab) | Microbial Ecology and Evolution |
Distinguished Professor of Biology, Class of 1954 Professor Evolution, Ecology & Behavior | milynch [at] indiana.edu 812-855-7384/6-0115(lab) JH 324C / JH 327 (lab) | Evolution, population genetics, and genomics. |
Emília Martins Professor of Biology Evolution, Ecology & Behavior | emartins [at] indiana.edu 812-856-5840/5-5652(lab) JH 133B / JH 133 (lab) | Behavioral evolution, phylogenetics and informatics. |
Assistant Professor of Biology Microbiology | jmckinla [at] indiana.edu 812-855-0359/5-9332(lab) JH A309 / A308 (lab) | Microbial metabolism and its role in cell physiology, the environment, and biotechnology. |
Colin Meiklejohn Assistant Scientist | cmeiklej [at] indiana.edu MY 216B | |
Keithanne Mockaitis Associate Scientist | kmockait [at] indiana.edu 812-856-2051 MY 311 | |
Associate Professor of Biology Evolution, Ecology & Behavior | armin [at] indiana.edu 812-856-1468/6-1783(lab) MY 102D / MY 102 (lab) | Evolution and Development; Insect Genomics; Developmental Plasticity; Behavioral Ecology and Sexual Selection; Insect Endocrinology; Invasive Species and post-invasion Evolution; Natural History of Onthophagus beetles. |
Associate Professor of Biology Evolution, Ecology & Behavior | lmoyle [at] indiana.edu 812-856-7027/6-7051(lab) JH 325C / JH 325 (lab) | Genetics of speciation and adaptation, Comparative genomics, Evolutionary ecology, Plant reproduction. |
Adjunct: Associate Professor of Microbiology & Immunology Microbiology | nelsonde [at] indiana.edu 812-856-2813/5-3145(lab) MS 420 | Chlamydial Biology, Microbial Pathogenesis and Pathogen Discovery. |
Assistant Professor of Biology Microbiology | irnewton [at] indiana.edu 812-855-3883 JH 221C | Functional genomics of environmental microbes and symbiosis. |
Distinguished Professor and Class of 1955 Professor Evolution, Ecology & Behavior | jpalmer [at] indiana.edu 812-855-8892 JH 235C / JH 229/235 (lab) | Comparative genomics and molecular evolution: Horizontal gene transfer in plants and fungi. Evolution of plant mitochondrial genomes and RNA editing. Intracellular transfer of organellar genes to the nucleus. Evolution of mutation rates. Molecular phylogeny of plants. |
Distinguished Professor of Biology Evolution, Ecology & Behavior | lriesebe [at] interchange.ubc.ca unlisted phone MY 330 | Plant evolutionary genomics; speciation; domestication; invasiveness; Compositae genomics; conservation. |
Associate Professor of Biology Microbiology | drowemag [at] indiana.edu 812-855-8514/6-0723(lab) JH 451(lab) | Integrons and Super-Integrons; biofilm formation; c-di-GMP signalling pathways; natural competence; ecology and pathogenesis in the Vibrionaceae. |
Professor Emeritus of Biology | taymil [at] indiana.edu 812-855-3340 SI 220A | The interferon response in hepatitis C patients. A study using DNA array technology to explain the differences in response to treatment and decrease in viral titer. |
Adjunct: Associate Professor | gvelicer [at] indiana.edu 812-856-2586/5-9332(lab) JH 469 / JH A308 (lab) | Ecology and evolution of bacterial social behavior. |
Professor of Biology; Microbiology Section Associate Chair Microbiology | mwinkler [at] bio.indiana.edu 856-1318/6-1184/6-1781 JH A414 / JH A410 (lab) | Physiology, molecular genetics, and pathogenesis of the bacterium Streptococcus pneumoniae (pneumococcus). |





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