Note: This list is not exhaustive.

2007

• Barkus, R.V., Klyachko, O., Horiuchi, D., Dickson, B.J, and Saxton, W.M. (2007). Identification of an axonal kinesin-3 motor for fast anterograde vesicle transport that facilitates retrograde transport of neuropeptides, Molecular Biology of the Cell, in press (published on-line November 7).
• Bennett, A. and J. D. Bever. 2007. Mycorrhizal mediation of plant response to herbivory. Ecology. In press.
• Bleakley, B.H., D.J. Parker, and E.D. Brodie III. 2007. Non-additive effects of group membership can lead to additive group phenotypes for anti-predator behaviour of guppies, Poecilia reticulata. In press. Journal of Evolutionary Biology.
  
• Brodie, E. D., III, and J. W. McGlothlin. 2007. A cautionary tale of two matrices: the duality of multivariate abstraction. Journal of Evolutionary Biology 20: 9-14. [pdf]
• Clay, K., K. Reinhart, J. A. Rudgers, T. Tintjer, J. L. Koslow, S. L. Flory. Red Queen Communities. In: Ecology of Infectious Diseases: Interactions between diseases and ecosystems. Proceedings of the 11th Cary Conference, May 2005 Conveners: V. Eviner, F. Keesing, & R. Ostfeld. In press, 2007.
• Stephanie C. Ems-McClung, Kathleen M. Hertzer, Xin Zhang, Mill Miller, and Claire E. Walczak. 2007. The Interplay of the N- and C-Terminal Domains of MCAK Control Microtubule Depolymerization Activity and Spindle Assembly. Molecular Biology of the Cell. 18: 282-294.
• Flory, S.L., J.A. Rudgers, and K. Clay. 2007. Experimental light treatments affect invasion success and the impact of Microstegium vimineum on the resident community. Natural Areas Journal. In press.
• Frey, F. M. 2007. Phenotypic integration and the potential for independent color evolution in a polymorphic spring ephemeral. American Journal of Botany (in press).
• F. M. Frey, L. F. Delph, B. Dinneen, and C. Twomey. 2007. The evolution of sexually dimorphic flower production under sexual, fertility, and viability selection. Evolutionary Ecology Research 9: 1-19.
• Greives, T.J., Casto, J.M., and Ketterson, E.D. In Press. Consequences of a Male-Bias During the Breeding Season on Behavior, Condition and Immune Function in Captive Dark-eyed Juncos, Junco Hyemalis. Journal of Avian Biology.
• Greives, T.J, Mason, A.O., Scotti, M.L., Ketterson, E.D., Kriegsfeld, L.J. and Demas G.E. In Press. Environmental control of kisspeptin: Implications for seasonal reproduction. Endocrinology.
• Horiuchi, D., Collins, C.A., Bhat, P., Barkus, R.V., DiAntonio, A., and Saxton, W.M. (2007). Control of a kinesin-cargo linkage mechanism by JNK pathway kinases. Current Biology 17, 1313-1317.
• Koskella, B. and Lively, C.M. (2007) Advice of the rose: Experimental coevolution of a trematode parasite and its snail host. Evolution 61 (1): 152–159.
• Joel A. Lanie, Wai-Leung Ng, Krystyna M. Kazmierczak, Tiffany M. Andrzejewski, Tanja M. Davidsen, Kyle J. Wayne, Hervé Tettelin, John I. Glass, and Malcolm E. Winkler. 2007. Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of Streptococcus pneumoniae and Comparison with That of Unencapsulated Laboratory Strain R6. Journal of Bacteriology, January 2007, p. 38-51, Vol. 189, No. 1. [abstract]
• Mattingly W B, R L Hewlate, and H L Reynolds. 2007. Species evenness and invasion resistance of experimental grassland communities. Oikos. In press.
• McGlothlin, J. W., D. L. Duffy, J. L. Henry-Freeman & E. D. Ketterson. In press. Diet quality affects an attractive white plumage pattern in dark-eyed juncos. Behavioral Ecology & Sociobiology.
• Richardson A. O., and Palmer, J. D.  2007.  Horizontal gene transfer in plants.  J. Exp. Botany, 58:1-9.
• Scott, R. J., G. J. Gastony, J.W. Weatherford, and T. Nakazato. Characterization of Four Members of the Alpha-Tubulin Gene Family in Ceratopteris richardii. American Fern Journal. In press.
• Shelby JA, Madewell R, Moczek AP 2007. Juvenile hormone mediates sexual dimorphism in horned beetles. Journal of Experimental Zoology B, Molecular and Developmental Evolution in press.
• Stumpf, J.D., A.R. Poteete, and P.L. Foster. 2007 Amplification cannot account for adaptive mutation in Escherichia coli. J. Bacteriol. 189:2291-2299.
• Swem L. R., Swem, D. L., Wu, J.. & C. E. Bauer. 2007. Purification and Assays of Rhodobacter capsulatus RegB-RegA Two Component Signal Transduction System. In Two-Component Signaling Systems" edited by Mel Simon, Brian Crane and Alexandrine Bilwes Crane. Methods in Enzymology. In Press.
• Sylvia, D. M., W. Kaonongbua, and J. D. Bever. 2007. Isolation, Culture and Detection of Arbuscular Mycorrhizal Fungi. In Manual of Methods in Environmental Microbiology. 3rd Edition. FEMS. In press.
• Telgkamp, P., Combs, N., and Smith, G.T. 2007. Serotonin in a diencephalic nucleus controlling communication in an electric fish: Sexual dimorphism and relationship to indicators of dominance. Journal of Neurobiology (in press).
• M. A. Thal, B. R. Wasik, J. Posto, and R. W. Hardy. 2007. Template requirements for recognition and copying by Sindbis virus RNA-dependent RNA polymerase. Virology. Virology. 358: p. 221-232.
• Ashley B. Williams and Patricia L. Foster. 2007. The Escherichia coli histone-like protein HU has a role in stationary phase adaptive mutation. Genetics (In press).
• Wagner, J.K. et Y.V. Brun. 2007. Out on a limb: how the Caulobacter stalk can boost the study of bacterial cell shape. Molecular Microbiology, in press.
• Williams, A.B., and P.L. Foster. 2007. The Escherichia coli histone-like protein HU has a role in stationary phase adaptive mutation. Genetics In Press.
• Wu, J., & C. E. Bauer. 2007. RegB/RegA, A Global Redox-Responding Two-Component Regulatory System. In, Bacterial Signal Transduction: network and drug targets. Ryutaro Utsumi edt. In Press, Landes Bioscience Eurekah, Georgetown, TX
• Joel A. Ybe, Sanjay Mishra, Stephen Helms and Jay Nix. 2007. Crystal Structure at 2.8 Å of the DLLRKN-containing Coiled-coil Domain of Huntingtin-Interacting Protein 1 (HIP1) Reveals a Surface Suitable for Clathrin Light Chain Binding. (In press)
• Zheng, Z., Chen, G., Joshi, S., Brutinel, E., Yahr, T., and Chen, L. Biochemical characterication of a regulatory cascade controlling transcription of the pseudomonas aeruginosa type III secretion system. Journal of Biological Chemistry, 2007, in press.

2006

• Alison E. Bennett, Janice Alers-Garcia, and James D. Bever. 2006. Three-Way Interactions among Mutualistic Mycorrhizal Fungi, Plants, and Plant Enemies: Hypotheses and Synthesis. American Naturalist 167(2): 141-152. [abstract]
• An, D., T. Danhorn, C. Fuqua, and M. R. Parsek. 2006. Quorum sensing and motility mediate interactions between Pseudomonas aeruginosa and Agrobacterium tumefaciens in biofilm cocultures. Proc. Natl. Acad. Sci. USA 103:3828-3833.
• Anderson, I. A. and J.W. Busch.  2006.  Relaxed pollinator-mediated selection weakens floral integration in self-compatible taxa of Leavenworthia (Brassicaceae).   American Journal of Botany 93: 860-867.
• Barker, M. S. and R. J. Hickey. 2006. A revision of Caribbean Adiantopsis (Pteridaceae). Annals of the Missouri Botanical Garden 93(3): 371-401.
• Bleakley, B.H., Martell, C.M. & Brodie, E.D. 2006. Variation in anti-predator behavior among five strains of inbred guppies, Poecilia reticulata. Behavior Genetics 36: 783-791.
• Brown, J.M., and I. Cooper. 2006. Evolution of wing pigmentation patterns in a tephritid gallmaker: divergence and hybridization. Pp. 253-261 in Galling Arthropods and Their Associates – Ecology and Evolution, K. Ozaki, J. Yukawa, T. Ohgushi, and P.W. Price, eds. Springer-Verlag, Tokyo.
• Busch, J. W. 2006. Heterosis in an isolated, effectively small, and self-fertilizing population of the flowering plant Leavenworthia alabamica. Evolution 60: 184-191.
• Chen, G., Wang, C., Fuqua, C., Zhang, L.-H. and Chen, L. The Crystal Structure and Mechanism of TraM2, a Second Quorum Sensing Antiactivor of Agrobacterium tumefaciens strain A6. Journal of Bacteriology, September 2006, 188:8244-8251. [abstract]
• Chumley, T. W., Palmer, J. D., Mower, J. P., Fourcade, H. M., Calie, P. J., Boore, J. L., and Jansen, R. K.  2006.  The complete chloroplast genome sequence of Pelargonium x hortorum: Organization and evolution of the largest and most highly rearranged chloroplast genome of land plants.  Mol. Biol. Evol. 23:2175-2190.
• Cianciolo, J., S.L. Flory, and J. Atwell. 2006. Evaluating the use of Inquiry-based activities: Does student and teacher behavior really change? Journal of College Science Teaching 36:3.
• Clay, K., Reinhart, K., Rudgers, J., Tintjer, T., Koslow, J. and S. L. Flory. 2006. Red queen communities. In Ecology of Infectious Diseases: Interactions between diseases and ecosystems. (V. Eviner, F. Keesing and R. Ostfeld, Eds.). Princeton University Press, Princeton (in press).
• Dharmasiri, S., Swarup, R., Mockaitis, K., Dharmasiri, N., Singh, S.K., Kowalchyk, M., Marchant, A., Mills, S., Sandberg, G., Bennett, M., and M. Estelle. 2006. AXR4 is required for localization of the auxin influx facilitator AUX1. Science, 312:1218-1220.
• Flory, S.L. and K. Clay. 2006. Invasive shrub distribution varies with distance to roads and stand age in eastern deciduous forests in Indiana, USA. Plant Ecology 184:131-141.
• Greives, T. J., J. W. McGlothlin, J. M. Jawor, G. E. Demas, and E. D. Ketterson. 2006. Testosterone and immune function inversely co-vary in a wild population of breeding Dark-eyed Juncos (Junco hyemalis). Functional Ecology 20: 812-818. [pdf]
• Timothy M. Griffith and Maxine A. Watson. 2006. Is Evolution Necessary for Range Expansion? Manipulating Reproductive Timing of a Weedy Annual Transplanted beyond Its Range. American Naturalist 167(2): 153-164. [abstract]
• Herre, EA, D Kyllo, SA Mangan, R. Husband, LC Mejia and AH Eom. 2006. An overview of arbuscular mycorrhizal fungi composition, distribution, and host effects from a tropical moist forest. In: Burslem DFRP, MA Pinard and SE Hartley (eds) Biotic interactions in the tropics.
• Ingram, E.L. & C.E. Nelson. 2006. Relationship between achievement and students' acceptance of evolution or creation in an upper-level evolution course. Journal of Research in Science Teaching. 43(1):7-24.
• Jawor, J. M., J. W. McGlothlin, J. M. Casto, T. J. Greives, E. A. Snajdr, G. E. Bentley, and E. D. Ketterson. Seasonal and individual variation in response to GnRH challenge in male dark-eyed juncos (Junco hyemalis). General and Comparative Endocrinology 149: 182-189. [pdf]
• Jha, S., Casey-Ford, R.G., Pedersen, J.S., Platt, T.G., Cervo, R., Queller, D.C., & Strassmann, J.E. 2006. The queen is not a pacemaker in the small colony wasps Polistes instabilis and P. dominulus. Animal Behaviour 71: 1197-1203.
• Kane, N. C., Gross, B. L., and Rieseberg, L. H. 2006. Transgressive segregation (plant breeding). pp. 331-334 in McGraw-Hill Yearbook of Science & Technology. McGraw-Hill, New York.
• Kehoe, D. M. and A. Gutu. 2006. Responding to color: the regulation of complementary chromatic adaptation. Annual Review of Plant Biology, 57: 127-150.
• Koskella, B., Giraud, T., and Hood, M.E. (2006) Pathogen relatedness affects the outcome of within- host competition. The American Naturalist 168: 121-126.
• Lawler, M.L., D.E. Larson, A.J. Hinz, D. Klein, and Y.V. Brun. (published online 20 October 2005) 2006.  Dissection of Functional Domains of the Polar Localization Factor PodJ in Caulobacter crescentus.  Molecular Microbiology, 59: 301-316.
• Lawler, M.L. and Y.V. Brun. 2006.  A molecular beacon defines bacterial asymmetry.  Cell, 124, 9-11.
• Luesse, D.L., DeBlasio, S.L. and Hangarter, R.P. 2006 Plastid Movement Impaired 2, a new gene involved in normal blue-light-induced chloroplast movements in Arabidopsis thaliana. Plant Physiol. 141: 1328-1337
• Lykken, G., Chen, G., Brutinel, E., Chen, L., and Yahr, T. Characterization of ExsC and ExsD self-association and heterocomplex formation. Journal of Bacteriology, October 2006, 188(19):6832-6840. [link]
• Marr, D. 2006. Seed fitness of hermaphrodites in areas with females and anther-smut disease: Silene acaulis and Microbotryum violaceum. New Phytologist 169: 741-751.
• Madewell R, Moczek AP 2006. Horn possession reduces maneuverability in a horn-polyphenic beetle. Journal of Insect Science 6: 21.
  
• Martins, E.P., T.J. Ord, J. Slaven, J.L. Wright, and E.A. Housworth. 2006. Individual, sex, seasonal and temporal variation in the amount of Sagebrush lizard scent-marks. Journal of Chemical Ecology, 32: 881-893.
• Mehdiabadi, N.J., Jack, C.N., Talley Farnham, T., Platt, T.G., Kalla, S.E., Shaulsky, G., Queller, D.C., and Strassmann, J.E. 2006. Kin preference in a social microbe. Nature. 442: 881-882.
• Meirmans S. and M. Neiman. 2006. Methodologies for testing a pluralist idea for the maintenance of sex. Biological Journal of the Linnean Society 89: 605-613.
• Moczek AP, Cochrane J 2006. Intraspecific female brood parasitism in the dung beetle Onthophagus taurus. Ecological Entomology 31: 1-6.
• Moczek AP, Cruickshank, TE, Shelby JA. 2006. When ontogeny reveals what phylogeny hides: gain and loss of horns during development and evolution of horned beetles. Evolution 60: 2329-2341.
• Moczek AP, Rose D, Sewell W, Kesselring BR. 2006. Conservation, innovation, and the evolution of horned beetle diversity. Development Genes and Evolution 216: 655-665.
• Mower, J. P. and Palmer, J. D.  2006.  Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris.  Mol. Gen. Genomics 276:285-296.
• Nakazato, T. and G.J. Gastony. 2006. High-throughput RFLP genotyping method for large genomes based on a chemiluminescent detection system. Plant Molec. Biol. Rep. 24:245a-245f.
• Nakazato, T., M.-K. Jung, E.A. Housworth, L.H. Rieseberg, and G.J. Gastony. 2006. Genetic map-based analysis of genome structure in the homosporous fern Ceratopteris richardii. Genetics 173:1585-1597.
• Natasha J. M., C. N. Jack, T. T. Farnham, T. G. Platt, S. E. Kalla, G. Shaulsky, D. C. Queller and J. E. Strassmann. 2006. Social evolution: Kin preference in a social microbe. Nature 442, 881-882.
• Neiman, M. 2006. Embryo production in a parthenogenetic snail (Potamopyrgus antipodarum) is negatively affected by the presence of other parthenogenetic females. Invertebrate Biology125: 45-50.
• Neiman, M. and T.A. Linksvayer. 2006. The conversion of variance and the evolutionary potential of restricted recombination Heredity 96: 111-121.
• Ong, L.E. and R. W. Innes 2006. AvrB mutants lose both virulence and avirulence activities on soybean and Arabidopsis. Mol. Micro. In Press.
• Ong, H.C. and J.D. Palmer. 2006. Pervasive survival of expressed mitochondrial rps14pseudogenes in grasses and their relatives for 80 million years following three functional transfers to the nucleus. BMC Evolutionary Biology 6:55.
• Osnas, E.E. and C.M. Lively.  2006.  Host ploidy, parasitism, and immune defense in a coevolutionary snail-trematode system.  Journal of Evolutionary Biology19:42-48.
• Pierce, D.L., D.S. O’Donnol, R.C. Allen, J.W. Javens, E.M. Quardokus, and Y.V. Brun. 2006.  Mutations in divL and cckA suppress a divJ null mutant in Caulobacter crescentus by reducing CtrA activity. Journal of Bacteriology, 188: 2473-2482.
• Pilling, A.D., D. Horiuchi, C.M. Lively, and W.M Saxton. 2006.  Kinesis-1 and dynein are the primary motors for fast transport of mitochondria in Drosophila motor axons.  Molecular Biology of the Cell 17: 2057-2068.
• Raff JA, Cook DC, Kaestle FA. 2006. Tuberculosis in the New World: a study of ribs from the Schild Mississippian population, West-Central Illinois. Memórias do Instituto Oswaldo Cruz 101(Suppl II): 25-27.
• Rieseberg, L. H., Kim, S-C, Randell, R. A., Whitney, K. D., Gross, B. L., Lexer, C. and K. Clay. 2006. Hybridization and the colonization of novel habitats by annual sunflowers. Genetica (Online First DOI 10.1007/s10709-006-9011-y)
• Rieseberg, L.H., T.E. Wood, and E. Baack. The nature of plant species. Nature, in the press. (March 30)
• Smith, C.B. and E.P. Martins. 2006. Display plastsicity in response to a robotic lizard: Signal matching or song-sharing in lizards? Ethology, in press.
• Smith, G.T., Unguez, G.A., and Weber, C. 2006. Distribution of Kv1-like potassium channels in the electromotor and electrosensory systems of a weakly electric fish. Journal of Neurobiology 66:1011-1031. (cover article)
• Fresia E. Steiner, F. E., Pinger, R. R., Vann, C. N, Abley, M. J., Sullivan, B., Grindle, N., Clay, K. and C. Fuqua. 2006. Detection of Anaplasma phagocytophilum and Babesia odocoilei in Ixodes scapularis Say (Acari: Ixodidae) collected in Indiana. Journal of Medical Entomology 43: 437-442.
• Stout, J.R., Rizk, R.S., Kline, S.L., and Walczak, C.E.  (2006).  Deciphering Protein Function During Mitosis in PtK Cells Using RNAi.  BMC Cell Biology. Jun 23;7(1):26.
• Swem, L. R., X. Gong, C.-A. Yu & C. E Bauer. 2006.  RegB controls a diverse array of metabolic processes by monitoring the redox state of the ubiquinone pool. J. Biol. Chem.  281: 6768-6775.
• Takebayashi, N, D. E. Wolf, and L. F. Delph. 2006. Effect of variation in herkogamy on outcrossing within a population of Gilia achilleifolia. Heredity (in press).
• Tseng, M. 2006. Interactions between the parasite's previous and current environment mediate the outcome of parasite infection. American Naturalist 168: 565-571.
• Wagner, J.K., S. Setayeshgar, L. Sharon, J. Reilly, et Y.V. Brun. 2006. A nutrient uptake role for bacterial cell envelope extensions. PNAS, 103 : 11772-11777.
• Wang, C., Zhang, H.-B., Chen, G., Chen, L, and Zhang, L.-H.. Dual Control of Quorum Sensing by Two TraM-Type Antiactivators in Agrobacterium tumefaciens Octopine Strain A6. Journal of Bacteriology, April 2006, p. 2435-2445, Vol. 188, No. 7. [link]
• Whippo, C.W. and Hangarter, R.P. 2006 Phototropism: Bending Towards Enlightenment. Plant Cell. 18: 1110-1119.
• Yuan, H., S. Masuda, V, Dragnea, S. Anderson, K. Moffat & C. E. Bauer. 2006. Structure of the blue light photoreceptor, BluP (Slr1694) from Synechocystis PCC6803 reveals photoinduced alterations of a hydrogen bond network to FAD. Biochemisty, 45: 12687-12694.
• Xin Zhang and Claire E. Walczak. 2006. Chromosome Segregation: Correcting Improperly Attached Chromosomes. Current Biology. 16: r677-679.

2005

• Alvey, R. M., Li, L., Balabas, B., Stowe-Evans, E. L., and D. M. Kehoe. 2005. Signal transduction pathways regulating chromatic adaptation. In Light Sensing in Plants (Ed. M. Wada, K. Shimazaki, and M. Iino) (Springer-Verlag Publishers, Tokyo) pp. 299-306.
• Baer, C. F., F. Shaw, C. Steding, M. Baumgartner..., K Simonelic, et al. 2005. Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. Proc. Natl. Acad. Sci. USA 102: 5785-5790. [link]
• Barker, M. S. and L. Sanchez. 2005. Inks Lake State Park and Westcave Preserve, Botany 2005 AFS Fern Foray. Fiddlehead Forum: Bulletin of the American Fern Society 32(4-5): 31-33.
• Barker, M. S., J. Demuth, and M. Wade. 2005. Maternal expression relaxes constraint on innovation of the anterior determinant, bicoid. PLoS Genetics 1(5): e57. (Highlighted in Nature Reviews Genetics in January 2006.)
• Barker, M. S. 2005. A Natural History of Ferns by Robbin C. Moran. American Fern Journal 95(3): 128-129.
• Barker, M. S., S. W. Shaw, R. J. Hickey, J. E. Rawlins, and J. Fetzner. 2005. Lepidopteran soral crypsis on Caribbean ferns. Biotropica 37(2): 314-316. (Discussed in BBC Wildlife Magazine in January 2006.)
• Berleman, J., & C. E. Bauer 2005. A chemotaxis like signal transduction cascade is involved in controlling flagella biosynthesis in Rhodospirillum centenum, Mol. Microbio. 55, 1390-1402
• Berleman, J., & C. E. Bauer 2005. Involvement of a Che-like signal transduction cascade in regulating cyst cell developmental Rhodospirillum centenum.  Mol . Microbiol.  56, 1457-1466.
• Brandvain, Y. and D. Haig (2005). Divergent mating systems and parental conflict as a barrier to hybridization in flowering plants. American Naturalist 166: 330-338. [pdf]
• Busch, J. W. 2005. Inbreeding depression in self-incompatible and self-compatible populations of Leavenworthia alabamica. Heredity 94:159-165.
• Busch, J. W. 2005. The evolution of self-compatibility in geographically peripheral populations of Leavenworthia alabamica (Brassicaceae). American Journal of Botany 92:1503-1512.
• Davis, S. L. and L. F. Delph. 2005. Prior selfing and gynomonoecy in Silene noctiflora L. (Caryophyllaceae): opportunities for enhanced outcrossing and reproductive assurance. International Journal of Plant Sciences 166: 475-480.
• DeBlasio, S.L, Luesse, D.L. and Hangarter, R.P. 2005 A Plant Specific Protein Essential for Blue-Light-Induced Chloroplast Movements. Plant Physiol. 139: 101-114.
• Delph, L. F., J. L. Gehring, A. M. Artnz, M. Levri, and F. M. Frey. 2005. Genetic correlations with floral display lead to sexual dimorphism in the cost of reproduction. American Naturalist 166: S31-S41.
• Delph, L. F. and D. E. Wolf. 2005. Evolutionary consequences of gender plasticity in genetically dimorphic breeding systems. New Phytologist 166: 119-128.
• Fischer, W. M. and Palmer, J. D.  2005.  Evidence from small-subunit ribosomal RNA sequences for a fungal origin of Microsporidia.  Mol. Phylogenet. Evol. 36:606-622.
• Flory, S.L., E.L. Ingram, B.J.Heidinger, and T. Tintjer. 2005. Hands–On in the Non-Laboratory Classroom: Reconstructing Plant Phylogenies Using Morphological Characters. The American Biology Teacher 67:542-549.
• Frey, F. M., R. Davis, and L. F. Delph. 2005. Manipulation of floral symmetry does not affect seed production in Impatiens pallida. International Journal of Plant Sciences 166: 659-662.
• Gee, J., Valderas, M., Kovach, M., Grippe, V., Robertson, G.T., Ng, W.L., Richardson, J., Winkler, M.E., and Roop, R.M. 2005. The Brucella abortus Cu/Zn superoxide dismutase (SodC) is required for optimal resistance to oxidative killing by murine macrophages and wild type virulence in experimentally infected mice. Infect Immun 73: 2873-2880
• Gilmour, R., Foster, J.E., Sheng, Q., McClain, J.R., Riley, A., Sun,P.M., Ng, W.L., Yan, D., Nicas, T.I., Henry, K., and Winkler, M.E. 2005. New Class of Competitive Inhibitor of Bacterial Histidine Kinases. J Bacteriol 187: 8196-8200.
• Griffith, T. and Watson, M.A. 2005. Stress avoidance in a common annual: reproductive timing is important for local adaptation and geographic distribution. J. Evol. Biol. 18:1601-1612.
• Herre, E.A., D.A. Kyllo, S. A. Mangan, R. Husband, L. C. Mejia, and A-H. Eom (2005):) in Biotic Interactions in the Tropics. Burslem, D.F.R.P., Pinard, M.A. & Hartley, S.E. (eds.) An overview of Arbuscular Mycorrhizal Fungi composition, distribution, and host effects from a Tropical Moist Forest. pp. 204-225. (Cambridge University Press)
• Per Holmfeldt, Xin Zhang, Sonja Stenmark, Claire E Walczak and Martin Gullberg. 2005. CaMKII gamma-mediated inactivation of the Kin I kinesin MCAK is essential for bipolar spindle formation. EMBO J. 24: 1256-1266.
• Horiuchi, D., Barkus, R.V., Pilling, A.D., Gassman, A, and Saxton, W.M. (2005). APLIP1, a kinesin-binding JIP-1/JNK scaffold protein, influences the axonal transport of both vesicles and mitochondria in Drosophila. Current Biology 15, 2137-2141.
• Kane, N. C. and Rieseberg, L. H. 2005. Maize genetics: The treasure of the Sierra Madre. Current Biology 15(2) R137-R139. [link]
• Kim, S.Y., Y. He, Y. Jacob, Y.S. Noh, S. Michaels, and R. Amasino, Establishment of the Vernalization-Responsive, Winter-Annual Habit in Arabidopsis Requires a Putative Histone H3 Methyl Transferase. Plant Cell, 2005. 17(12): p. 3301-3310. [link]
• Ketel, C.S., E.F. Anderson, M.L. Vargas, J. Suh, S. Strome, and J.A. Simon. 2005. Subunit contributions to histone methyltransferase activities of fly and worm Polycomb group complexes. Molec. Cell. Biol. 25: 6857-6868.
• Kolodziejski, J.A., Nelson, B.S., and Smith, G.T. 2005. Sex and species differences in neuromodulatory input to a premotor nucleus: a comparative study of substance P and communication behavior in weakly electric fish. J. Neurobiol. 62:299-315.
• Layton, J.C. and P.L. Foster 2005. Error-prone DNA polymerase IV is regulated by the heat-shock chaperone GroE in Escherichia coli. J. Bacteriol. 187:449-457.
• Li, L. and D. M. Kehoe. 2005. In vivo analysis of the roles of conserved aspartate and histidine residues within a complex response regulator. Molecular Microbiology, 55: 1538-1552.
• Li, G., C. S. Smith, Y. V. Brun, and J. X. Tang. 2005. The elastic properties of the Caulobacter crescentus adhesive holdfast are dependent on oligomers of N-acetylglucosamine.  Journal of Bacteriology, 187: 257-265.
• Marr, D. L. and L. F. Delph. 2005. Spatial and temporal pattern of a pollinator-transmitted pathogen in a long-lived perennial (Silene acaulis). Evolutionary Ecology Research 7: 335-352.
• Martins, E.P., T. J. Ord, and S.W. Davenport. 2005. Combining motions into complex displays: playbacks with a robotic lizard. Behavioral Ecology and Sociobiology, 58: 351-360.
• McGlothlin, J. W., P. G. Parker, V. Nolan Jr., and E. D. Ketterson. 2005. Correlational selection leads to genetic integration of body size and an attractive plumage trait in dark-eyed juncos. Evolution 59: 658-671.
• Mower, J. P.  2005.  PREP-Mt: predictive RNA editor for plant mitochondrial genes.  BMC Bioinformatics 6:#96 (15 pages)
• Neiman, M., J. Jokela, and C.M. Lively.  2005.  Variation in asexual lineage age in Potamopyrgus antipodarum, a New Zealand snail.  Evolution 59: 1945-1952.
• Neiman, M., and C.M. Lively.  2005.  Male New Zealand mud snails persist in copulating with asexual and parasitically castrated females.  American Midland Naturalist 154:88-96.
• Ng, W.L., Tsui, H.C.T., and Winkler, M.E. 2005. Regulation of the pspA virulence factor and essential pcsB murein biosynthetic genes by phosphorylated VicR (YycF) response regulator in Streptococcus pneumoniae. J Bacteriol 187: 7444-7459.
• Nobuta K, Ashfield T, Kim S, Innes RW. 2005. Diversification of non-TIR class NB-LRR genes in relation to whole genome duplication events in Arabidopsis. Mol. Plant-Microbe Interact. 18,103-109.
• Nomata, J.,  K. Inoue, M. Kitashima, L. Swem, C. E. Bauer & Y. Fujita , 2005. Characterization of Two Separable Components, L-protein (BchL) and NB-protein (BchN-BchB), of Dark-operative Protochlorophyllide Reductase from Rhodobacter capsulatus. Biochimica et Biophysica Acta. 1708, 229-237.
• Ord, T. J., E. P. Martins, S. Thakur, K. K. Mane, K. Borner. 2005. Trends in animal behaviour research (1968-2002): ethoinformatics and mining library databases. Animal Behaviour 69: 1399-1413.
• Osnas, E.E. and C.M. Lively.  2005.  Immune response to sympatric and allopatric parasites in a snail-trematode interaction.  Frontiers in Zoology, 2005, 2:8.
• Parkinson, C. L., Mower, J. P., Qiu, Y.-L., Shirk, A., Song, K., Young, N. D., dePamphilis, C. W., and Palmer, J. D.  2005.  Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae.  BMC Evol. Biol. 5:#73 (12 pages)
• Rizk, R.S. and Walczak, C.E. (2005).  Chromosome Dynamics:  Actin’s Gone Fishing.  Curr. Biol. 15: R841-R842.  (Dispatch). 
• Schmidt, D., D. Rose, W. Saxton, and S. Strome. 2005. Functional analysis of cytoplasmic dynein heavy chain in C. elegans with fast-acting temperature-sensitive mutations. Molec. Biol. Cell 16: 1200-1212.
• C. S. Smith and Y. V. Brun. Sept. 2005.  Bacterial cell differentiation.  In Encyclopedia of Life Sciences.  John Wiley and Sons, Ltd: Chichester.  Invited review. [link]
• Smith, G.T., Allen, A.R., Gammie, S.C., and Oestreich, J. 2005. Immunohistochemistry for L-citrulline reveals nitric oxide production in nitric oxide synthase-expressing neurons in the electromotor and electrosensory systems of the weakly electric fish, Apteronotus leptorhynchus. Brain, Behav. Evol. 65:1-13.
• Städler, T., M. Frye, M. Neiman, and C. M. Lively.  2005.  Mitochondrial haplotypes and the New Zealand origin of clonal European Potamopyrgus, an invasive aquatic snail.  Molecular Ecology 14: 2465-2473.
• Stumpf, J.D. and P.L. Foster 2005 Polyphosphate kinase regulates error-prone replication by DNA polymerase IV in Escherichia coli. Molec. Microbiol. 57:751-761.
• Swem, D. L., L. R. Swem, A. Setterdahl & C. E. Bauer. 2005. Involvement of SenC in assembly of cytochrome c oxidase in Rhodobacter capsulatus. J. Bacteriol. 87: 8081-8087.
• Tang D, Christiansen K, Innes RW. 2005. Regulation of plant disease resistance, stress responses, cell death and ethylene signaling in Arabidopsis by the EDR1 protein kinase. Plant Physiology 138: 1018-1026.
• Valderas, M.W., Alcantara, R. B., Baumgartner, J.E., Bellaire, B.H., Robertson, G.T., Ng, W.L., Richardson, J.M., Winkler, M.E., and Roop, R.M. II 2005. Role of HdeA in acid resistance and virulence in Brucella abortus 2308. Vet Microbiol 107:307-12.
• Wagner, J. , C. Galvani, and Y. V. Brun.  2005.  Caulobacter crescentus requires RodA and MreB for stalk synthesis and to prevent ectopic pole formation.  Journal of Bacteriology, 187: 544-53.  Cover feature.
• Weinig, C. 2005. Rapid evolutionary responses to selection in heterogeneous environments among agricultural and nonagricultural weeds. International Journal of Plant Sciences 166: 641-647.
• Whippo, C.W. and Hangarter, R.P. 2005 A Brassinosteroid-Hypersensitive mutant of BAK1 Indicates that a Convergence of Photomorphogenic and Hormonal Signaling Modulates Phototropism. Plant Physiol. 139: 448-457.
• Wood T.E., J.M. Burke, and , L.H. Rieseberg. 2005. Parallel genotypic adaptation: when evolution repeats itself. Genetica 123:157-170.
  

2004

• Ashfield T, Ong L, Innes RW. 2004. Convergent evolution of disease resistance gene specificity in two flowering plant families. Plant Cell, 16, 309-318.
• Berelman, J. & C. E. Bauer 2004 Characterization of the cyst cell formation in the purple photosynthetic bacterium Rhodospirillum centenum. Microbiology150, 383-390 (Featured on cover)
• Berleman, J., B.  Hasselbring, & C. E. Bauer 2004. Hypercyst Mutants in Rhodospirillum centenum Identify Regulatory Loci Involved in Cyst Cell Differentiation. J. Bacteriol. 186, 5834-5841 (Featured on cover).
• Bergthorsson, U., Richardson, A., Young, G. J., Goertzen, L., and Palmer, J. D.  2004.  Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella.  Proc. Natl. Acad. Sci. USA 101:17747-17752.
• Busch, J. W., M. Neiman*, and J. M. Koslow. 2004. Evidence for maintenance of sex by pathogens in plants. Evolution 58: 2584-2590.
• Bodenmiller, D., E. Toh, and Y. V. Brun. 2004.  Development of surface adhesion in Caulobacter crescentus.  Journal of Bacteriology, 186: 1438-47.
• Guozhou Chen, James Malenkos, Mee-Rye Cha, Clay Fuqua and Lingling Chen. 2004. Quorum-Sensing Antiactivator TraM Forms a Dimer That Dissociates to Inhibit TraR. Molecular Microbiology 52(6):1641-1651.
• Cho, Y., Mower, J. P., Qiu, Y.-L., and Palmer, J. D.  2004.  Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants.  Proc. Natl. Acad. Sci. USA 101:17741-17746.
• Danhorn, T., M. Hentzer, M. Givskov, M. Parsek, and C. Fuqua. 2004. Phosphorous limitation enhances biofilm formation of the plant pathogen Agrobacterium tumefaciens through the PhoR-PhoB regulatory system. J. Bacteriol. 186:4492-4501.
• Delph, L. F., F. M. Frey, J. C. Steven, and J. L. Gehring. 2004. Investigating the independent evolution of the size of floral parts via G-matrix estimation and artificial selection. Evolution and Development 6: 438-448.
• Delph, L. F., J. L. Gehring, F. M. Frey, A. M. Artnz, and M. Levri. 2004. Genetic constraints on floral evolution in a sexually dimorphic plant revealed by artificial selection. Evolution 58: 1936-1946.
• Dybdahl and Krist.  2004.  Genotypic vs. condition effects on parasite-driven rare advantage.  Journal of Evolutionary Biology 17:967-973.
• Elsen, S., L. Swem, D. Swem, & C. E. Bauer. 2004. RegB/RegA, a highly conserved redox-responding global regulatory system. Microbio. and Mol. Biol. Rev.  68, 263-279.
• Frey, F. M. 2004. Opposing natural selection from herbivores and pathogens may maintain floral-color variation in Claytonia virginica (Portulacaceae). Evolution 58: 2426-2437.
• Gooding, K.B., Higgs, R., Hodge, B., Stauffer, E., Heinz, B., McKnight, K., Phipps, K., Shapiro, M., Winkler, M., Ng, W.L., and Julian, R.K. 2004. High throughput screening of library compounds against an oligonucleotide substructure of an RNA target. J Am Soc Mass Spectrom 15: 884-892.
• Gross, B. L. , Kane, N. C., Lexer, C. Ludwig, F., Rosenthal, D. M., Donovan, L. A., and Rieseberg, L. H. 2004. Reconstructing the origin of Helianthus deserticola: Survival and selection on the desert floor. Am. Nat. 164:145-156. [link]
  
• Huber, H., *Kane, N. C.,* Heschel, M. S. von Wettberg, E. J. Banta, J., Leuck, A. and Schmitt, J. 2004. Frequency and Microenvironmental Pattern of Selection on Plastic Shade-Avoidance Traits in a Natural Population of Impatiens capensis. Am. Nat. 163: 548-563. [link]
• Kawasaki, I., A. Amiri, Y. Fan, N. Meyer, S. Dunkelbarger, T. Motohashi, T. Karashima, O. Bossinger, and S. Strome. 2004. The PGL family proteins associate with germ granules and function redundantly in C. elegans germline development. Genetics 167: 645-661.
  
• Krist, A.C., J. Jokela, J. Wiehn, and C.M. Lively.  2004.  Host condition affects prevalence of infection.  Journal of Evolutionary Biology 17:33-40.
• Weijie Lan*, Xin Zhang*, Susan L. Kline-Smith, Sara E. Rosasco, Gregory A. Barrett-Wilt, Jeffrey Shabanowitz, Donald F. Hunt, Claire E. Walczak, P. Todd Stukenberg. 2004. Aurora B Phosphorylates Centromeric MCAK and Regulates Its Localization and Microtubule Depolymerization Activity. Current Biology.  14:273-286. (* co-first author).
• Lively, C.M., M.F. Dybdahl, J. Jokela, E. Osnas, and L.F. Delph.  2004.  Host sex and local adaptation by parasites in a snail-trematode interaction.  American Naturalist 164:S6-S18.
• Lo, T., E. van Der Schalie, T. Werner, Y. V. Brun, and N. Din. 2004.  A temperature-sensitive mutation in the dnaE of Caulobacter crescentus that prevents initiation but not ongoing elongation of DNA replication.  Journal of Bacteriology, 186: 1205-12.
• Louda, S., A. Parkhurst, K. Bradley, E. Bakker, J. Knops, E. Damschen, and L. Young. 2004. Spatial heterogeneity, not visitation, dominates variation in herbivory: reply. Ecology 85, p. 2906-2910.
• Ludwig, F., Rosenthal, D. M., Johnston, J. A., Kane, N.C., Gross, B. L., Lexer, C., Dudley, S. A., Rieseberg, L. H. and Donovan, L. A. 2004. Selection on leaf ecophysiological traits in a desert hybrid Helianthus species and early generation hybrids. Evolution 58:2682-2692. [pdf]
• Mangan, S. A., A. H. Eom, G. H. Adler, J. B. Yavitt and E. A. Herre. 2004. Diversity of arbuscular mycorrhizal fungi across a fragmented forest in Panama: insular AMF spore communities differ from mainland communities. Oecologia 141: 687-700.
• Martin, M., M. Trimble and Y. V. Brun.  2004.  Cell cycle-dependent abundance, stability and localization of FtsA and FtsQ in Caulobacter crescentus.  Molecular Microbiology, 54: 60-74. 
• McGlothlin, J. W., D. L. H. Neudorf, V. Nolan Jr., and E. D. Ketterson. 2004. Elevated testosterone reduces choosiness in female dark-eyed juncos (Junco hyemalis): evidence for a hormonal constraint on sexual selection? Proc. R. Soc. Lond. B 271:1377-1384.
• Mower, J. P., Stefanovi?, S., Young, G. J., and Palmer, J. D.  2004.  Gene transfer from parasitic  to host plants.  Nature 432:165-166.
• Neiman, M.  2004. Physiological dependence on copulation in parthenogenetic females can reduce the cost of sex. Animal Behaviour 67: 811-822.
• Neiman, M. and C.M. Lively.  2004.  Pleistocene glaciation is implicated in the phylogeographic structure of a New Zealand freshwater snail, Potamopyrgus antipodarum.  Molecular Ecology 13:3085-3098.
• Ng, W.L., Kazmierczak, K.M., and Winkler, M.E. 2004. Defective cell wall synthesis in Streptococcus pneumoniae R6 depleted for the essential PcsB putative murein hydrolase or the VicR (YycF) response regulator. Mol Microbiol 53: 1161-1175.
  
• Ng, W.L., and Winkler, M.E. 2004. Singular structures and operon organizations of essential two-component systems in species of Streptococcus. Microbiology 150: 3096-3098.
• Osnas, E.E. and C.M. Lively.  2004.  Parasite dose, prevalence of infection and local adaptation in a host-parasite system.  Parasitology 128:223-228.
• Pauw, A., S. A. Van Bael, H. A. Peters, S. D. Allison, J. L. C. Camargo, M. Cifuentes-Jara, A. Conserva, T. G. Restom, T. Heartsill-Scalley, S. A. Mangan, G. Nunez-Iturri, E. Rivera-Ocasio, M. Rountree, S. Vetter, C. Volkmer de Castilho. 2004. Physical damage in relation to carbon allocation strategies of tropical forest tree saplings. Biotropica 36: 410-413.
• Platt, T.G., Queller, D.C., & Strassmann, J.E. 2004. Aggression and worker control of caste fate in a multiple queen wasp, Parachartergus colobopterus. Animal Behaviour. 67: 1-10. [link]
• Powers, J., D. Rose, A. Saunders, S. Dunkelbarger, S. Strome, and W. Saxton. 2004. KLP-19 is required for polar exclusion force and for correct chromosome segregation. J. Cell Biol. 166: 991-1001.
• Shaw, S. W., M. S. Barker, and R. J. Hickey. 2004. New municipality records for Puerto Rican pteridophytes. Fern Gazette 17: 97-99.
• Smart, J. L., Willet, J., & C. E. Bauer. 2004. Identification of multiple regulators controlling heme biosynthesis in Rhodobacter capsulatus J. Mol. Biol. 342, 1171-1186
• Thakur, S. K. Mane, K. Borner, E.P. Martins and T. J. Ord. 2004. Content coverage of animal behavior data. In Visualization and Data Analysis, San Jose, CA SPIE-IS&T 5295: 305-311.
• Vendrasco, M.J. T.E. Wood and B.N. Runnegar. 2004. Articulated Palaeozoic fossil with 17 plates greatly expands disparity of early chitons. Nature 429: 288-291.
• Wagner J. and Y. V. Brun.  2004.  Regulation and utilization of cell division in differentiating bacteria.  In Molecules in Time and Space:  Bacterial Shape, Division, and Phylogeny.  M. Vicente, A. Valencia, J. Tamames, and J. Mingorance (eds.), Kulver Publishers, p. 103-131.  Invited review.
• Watson, M.A., Lu, Y. 2004. Annual shoot senescence in perennials. In L. D. Nooden, (ed) Plant Cell Death Processes, pp 259-269. Academic Press.
• Weinig, C., K. Gravuer, N. C. Kane, and J. Schmitt. 2004. Testing adaptive plasticity to UV: costs and benefits of stem elongation and light-induced phenolics. Evolution 58:2645-2656. [pdf]
• Whippo, C.W. and Hangarter, R.P. 2004 Phytochrome Modulation of Blue-light-Induced Phototropism. Plant, Cell Environ. 27: 1223–1228.
  

2003

• Adams, K. L. and Palmer, J. D.  2003.  Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus.  Mol. Phylogenet. Evol. 29:380-395.
• Agrawal, A.F. and C.M. Lively.  2003.  Modeling infection genetics as a two-step process combining gene-for-gene and matching-allele genetics.  Proceedings of the Royal Society, London B. 270:323-334.
• Alvey, R. M., Karty, J. A., Roos, E., Reilly, J. P., and D. M. Kehoe. 2003. pebAB, the operon encoding 15,16-dihydrobiliverdin oxidoreductase and PEB oxidoreductase, is coordinately regulated with cpeBA during complementary chromatic adaptation in Fremyella diplosiphon. The Plant Cell, 15: 2448-2463. (NOTE: This article was featured on the cover of the journal and was also selected for poster production and dissemination to members of the American Society of Plant Biologists at the 2004 National Meeting.)
• Ashfield T, Bocian A, Held D, Henk A, Marek L, Danesh D, Penuela S, Meksem K, Lightfoot D, Young N, Shoemaker R, Innes RW. 2003. Genetic and physical mapping of the soybean Rpg1-b disease resistance gene reveals a complex locus containing several tightly linked families of NBS-LRR genes. Mol. Plant-Microbe Interact, 16, 817-826.
• Bailey, M. F., L. F. Delph, and C. M. Lively. 2003. Modeling gynodioecy: novel scenarios maintaining polymorphism. American Naturalist 161: 762-776.
• Balabas, B., Montgomery, B. L., Ong, L. E., and D. M. Kehoe. 2003. CotB is essential for complete activation of green light induced genes during complementary chromatic adaptation in Fremyella diplosiphon. Molecular Microbiology, 50: 781-793. (NOTE: This article was featured on the cover of the journal.)
• Barker, M. S. and W. D. Hauk. 2003. An evaluation of Sceptridium dissectum (Ophioglossaceae) with ISSR markers: Implications for Sceptridium systematics. American Fern Journal 93(1): 1-19.
• Bauer, C. E., S.  Elsen, L. R. Swem, D. L. Swem & S. Masuda, 2003. Redox and light regulation of gene expression in photosynthetic prokaryotes.  Royal Soc. Phil. Trans.  358, 147-154.
• Bergthorsson, U., Adams, K. L., Thomason, B., and Palmer, J. D.  2003. Widespread horizontal transfer of mitochondrial genes in flowering plants.  Nature 424:197-201.
• Bradley, K.L., E. Damschen, L.M. Young, D. Kuefler, S. Went, G. Wray, N.M. Haddad, J.M.H. Knops, and S.M. Louda. 2003. Spatial heterogeneity, not visitation, dominates variation in herbivory. Ecology 84, p. 2214-2221.
• Cherbas, L., X. Hu, I. Zhimulev, E. Belyaeva, and P. Cherbas. 2003. EcR isoforms in Drosophila: Testing tissue-specific requirements by targeted blockade and rescue. Development, 130, 274-284. [link]
• Cole, J., G. G. Hardy, D. Bodenmiller, E. Toh, A. J. Hinz, and Y. V. Brun. 2003.  The HfaB, and HfaD adhesion proteins of Caulobacter crescentus are localized in the stalk.  Molecular Microbiology, 49: 1671-1683.
• Cooper, I.A., E. Roeder, and J.M. Brown. 2003. Arthropod response to burning and mowing in a reconstructed prairie. Ecological Restoration 21:204-5.
• Cummings, M. P., Nugent, J. M., Olmstead, R. G., and Palmer, J. D.  2003.  Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms.  Curr. Genet. 43:131-138.
• Danhorn, T., Ng, W.L., Richardson, A., Santos, J., Stumpf, J., Trimble, M., Wagner, J., and Kao, C. 2003. All's well that ends well: Creative solutions viruses use to ensure proper ends of linear genomes. Recent Res. Devel. Virol 5: 44-66.
• DeBlasio, S.L, Mullen, J.L., Luesse, D.L. and Hangarter, R.P. 2003 Phytochrome Modulation of Blue-Light-Induced Chloroplast Movements in Arabidopsis. Plant Physiol. 133: 1471-1479.
• Hauk, W. D. and M. S. Barker. 2003. Botrychium lanceolatum subsp. angustisegmentum in Ohio. American Fern Journal 93(2): 93-94.
• Hickey, R. J., M. S. Barker, and M. Ponce. 2003. An Adiantopsis hybrid from northeastern Argentina and vicinity. American Fern Journal 93(1): 42-44.
• Hinz, A. J., D. E. Larson, C. S. Smith, and Y. V. Brun. 2003.  The Caulobacter crescentus polar organelle development protein PodJ is differentially localized and is required for polar targeting of the PleC development regulator.  Molecular Microbiology, 47: 929-941.
• Hu, X., L. Cherbas, and P. Cherbas. 2003. Transcription activation by the ecdysone receptor: Identification of activation functions in EcR/USP. Mol. Endocrinol., 17, 716-731. [link]
• Jokela, J., C. M. Lively, M. F. Dybdahl, and J. A. Fox.  2003.  Genetic variation in sexual and clonal lineages of a freshwater snail.  Biological Journal of the Linnean Society 79:165-181.
• Kraft, B., J. Kikuchi, Masuda, S., V. Dragnia, G. Tollin, J. M. Zaleski, & C. E. Bauer. 2003. Spectroscopic and mutational analysis of the blue-light photoreceptor, AppA:  A novel photocycle involving flavin stacking with aeromatic amino acids.  Biochemistry, 42: 6726-6734.
• Ng, W.L., Robertson, G.T., Kazmierczak, K.M., Zhao, J., Gilmour, R., and Winkler, M.E. 2003. Constitutive expression of PcsB suppresses the requirement for the essential VicR (YycF) response regulator in Streptococcus pneumoniae R6. Mol Microbiol 50: 1647-1663. (First 3 authors contributed equally)
  
• Ng, W.L., Kazmierczak, K.M., Robertson, G.T., Gilmour, R., and Winkler, M.E. 2003. Transcriptional regulation and signature patterns revealed by microarray analyses of Streptococcus pneumoniae R6 challenged with sublethal concentrations of translation inhibitors. J Bacteriol 185: 359-370.
• C. T. Ranjith-Kumar, Xin Zhang, Cheng Kao. 2003. Enhencer-like activity of a brome mosaic virus RNA promoter. Journal of Virology. 77: 1830-1839.
• Robertson, G.T., Ng, W.L., Gilmour, R., and Winkler, M.E. 2003. Essentiality of clpX, but not clpP, clpL, clpC, or clpE, in Streptococcus pneumoniae R6. J Bacteriol 185: 2961-2966.
• Roop, R.M., 2nd, Gee, J.M., Robertson, G.T., Richardson, J.M., Ng, W.L., and Winkler, M.E. 2003. Brucella stationary-phase gene expression and virulence. Annu Rev Microbiol 57: 57-76.
• Segbert, C., R. Barkus, J. Powers, S. Strome, W. Saxton, and O. Bossinger. 2003. KLP-18, a Klp2 kinesin, is required for assembly of acentrosomal meiotic spindles in C. elegans. Molec. Biol. Cell 14: 4458-4469.
• Smith, C. S., A. J. Hinz, D. Bodenmiller, D. E. Larson, and Y. V. Brun.  2003.  Identification of genes required for the synthesis of the polar holdfast in Caulobacter crescentus.  Journal of Bacteriology, 185: 1432-1442.
• Swem, L., B. J. Kraft, D. L. Swem, A. T. Setterdahl, S. J. Masuda, D. B. Knaff, J. M. Zaleski & C, E, Bauer.  2003. Signal Transduction By The Global Regulator RegB Is Mediated By A Redox Active Cysteine.  EMBO J. 22, 4699-4780
• Tompkins, J.D., J.L. Nelson, J.C. Hazel, H.L. Leugers, J.D. Stumpf, and P.L. Foster 2003. Error-prone polymerase, DNA polymerase IV, is responsible for transient hypermutation during adaptive mutation in Escherichia coli. J Bacteriol. 185:3469-3472
• Tseng, M.  2003.  A simple parafilm M-based method for blood-feeding Aedes aegypti and Aedes albopictus (Diptera: Culicidae).  Journal of Medical Entomology 40:588-589.
• Tseng, M.  2003. Sex-specific response of a mosquito to parasites and crowding. Proceedings of the Royal Society of London: Biology Letters.  Published online: 12/17/2003.
• Weinig C., Dorn L.A., Kane N.C., German Z.M., Hahdorsdottir S.S., Ungerer M.C., Toyonaga Y., Mackay T.F.C., Purugganan M.D., Schmitt J. 2003. Heterogeneous Selection at Specific Loci in Natural Environments in Arabidopsis thaliana. Genetics 165: 321-329.
• Whippo, C.W. and Hangarter, R.P. 2003 Second Positive Phototropism Results from Coordinated Co-action of the Phototropins and Cryptochromes. Plant Physiol. 132: 1499-1507.
• Xin Zhang, Chul-Hyun Kim, K. Sivakumaran, Cheng Kao. 2003. Stable RNA structures can repress RNA synthesis in vitro by the brome mosaic virus replicase. RNA. 9: 555-565.

2002

• Adams, K. L., Daley, D. O., Whelan, J., and Palmer, J. D.  2002.  Genes for two mitochondrial ribosomal proteins in flowering plants are derived from their chloroplast or cytosolic counterparts.  Plant Cell 14:931-943.
• Adams, K. L., Qiu, Y.-L., Stoutemyer, M., and Palmer, J. D.  2002.  Punctuated evolution of mitochondrial gene content: High and variable rates of mitochondrial gene loss and transfer during angiosperm evolution.  Proc. Natl. Acad. Sci. USA 99:9905-9912.
• Agrawal, A. and C.M. Lively.  2002.  Infection genetics: gene-for-gene versus matching-allele models, and all points in between.  Evolutionary Ecology Research 4:79-90.
• Bailey, M. F. 2002. A cost of restoration of male fertility in a gynodioecious species, Lobelia siphilitica. Evolution 56: 2178-2186.
• Daley, D. O., Adams, K. L., Clifton, R., Qualmann. S, Millar, A. H., Palmer, J. D., Pratje, E., and Whelan, J.  2002.  Gene transfer from the mitochondrion to the nucleus: Novel mechanisms for gene activation from Cox2.  Plant J. 30:11-21.
• Davis, S. L. 2002. Allocation to floral structures in Thalictrum pubescens (Ranunculaceae), a cryptically dioecious species. Annals of Botany 90:119-126.
• Delph, L. F., F. N. Knapczyk, and D. R. Taylor. 2002. Among-population variation and correlations in sexually dimorphic traits of Silene latifolia. Journal of Evolutionary Biology 15: 1011-1020.
• Dong, C., S. Elsen L. Swem & C. E. Bauer. 2002.  AerR, a second aerobic repressor of photosynthesis gene expression in Rhodobacter capsulatus.  J. Bacteriol. 184, 2805-2814.
• Fong, Y., L. Bender, W. Wang, and S. Strome. 2002. Regulation of the different chromatin states of autosomes and X chromosomes in the germline of C. elegans. Science 296: 2235-2238.
• Frankino, W. A., R. A. Raff.  2002.  Evolutionary importance and pattern of phenotypic plasticity: Insights gained from development. (In press) Phenotypic Plasticity, functional and conceptual approaches. T. J. DeWitt and S. M. Scheiner, eds.).
• Ireland, M., J. A. Karty, E. M. Quardokus, J. P. Reilly, and Y. V. Brun.  2002.  Proteomic analysis of the Caulobacter crescentus stalk indicates competence for nutrient uptake. Molecular Microbiology, 45: 1029-1041.  Cover feature.
• Kane, N. C., Gross, B. L., and Rieseberg, L. H. 2002. Book review: Yanking Darwin’s Sword. Hey, J. :Genes, categories, and species - The evolution and cognitive cause of the species problem. Plant systematics and evolution 234: 237-239. [pdf]
• Karty, J. A., M. Ireland, Y. V. Brun, and J. P. Reilly.  2002.  Defining Absolute Confidence Limits in the Identification of Caulobacter Proteins by Peptide Mass Mapping.  Journal of Proteome Research, 1: 325-335.
• Karty, J. A., M. Ireland, Y. V. Brun, and J. P. Reilly.  2002.  Artifacts and unassigned masses encountered in peptide mass mapping. Journal of Chromatography B, 782: 363-383.
• Masuda, S., Dong, C., D. Swem, A. T. Setterdahl, D. B. Knaff, & C. E. Bauer.  2002. Aerobic repression of photosystem synthesis through  formation of an intramolecular disulfide bond in CrtJ.   Proc. Natl. Acad. Sci.. USA 99, 7078-7083
• Mangan, S. A. and G. H. Adler. 2002 Seasonal dispersal of arbuscular mycorrhizal fungi by spiny rats in a Neotropical forest. Oecologia 131(4):587-597.
• McClain, J., D. Rollo, B. Rushing & C. E. Bauer.  2002. Rhodospirillum centenum swim and swarm cells utilize separate motor/switch components to control lateral and polar flagella rotation.  J. Bacteriol.   184, 2429-2438.
• Robertson, G.T., Ng, W.L., Foley, J., Gilmour, R., and Winkler, M.E. 2002. Global transcriptional analysis of clpP mutations of type 2 Streptococcus pneumoniae and their effects on physiology and virulence. J Bacteriol 184: 3508-3520.
• Seib, L. O. and D. M. Kehoe. 2002. A Turquoise mutant genetically separates the expression of the genes encoding phycoerythrin and its associated linker peptides. J. Bacteriology, 184: 962-970.
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